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pdbe-kb
services
pdbe-graph-api
Commits
da90cbb4
Commit
da90cbb4
authored
Aug 03, 2019
by
Stephen Anyango
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Plain Diff
Handle more rstrip with =
parent
9bb30b0e
Changes
1
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1 changed file
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12 additions
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12 deletions
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-12
src/sifts.py
src/sifts.py
+12
-12
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src/sifts.py
View file @
da90cbb4
...
...
@@ -518,8 +518,8 @@ def get_pdb_from_uniprot(accession, mc):
elem
[
'end'
][
'residue_number'
]
=
elem
[
'seq_end'
]
elem
[
'start'
][
'author_residue_number'
]
=
elem
[
'rnum_start'
]
elem
[
'end'
][
'author_residue_number'
]
=
elem
[
'rnum_end'
]
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'rins_start'
].
rstrip
()
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'rins_end'
].
rstrip
()
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'rins_start'
].
rstrip
()
if
elem
[
'rins_start'
]
else
elem
[
'rins_start'
]
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'rins_end'
].
rstrip
()
if
elem
[
'rins_end'
]
else
elem
[
'rins_end'
]
del
elem
[
'seq_start'
]
del
elem
[
'seq_end'
]
...
...
@@ -1156,8 +1156,8 @@ def get_unp(pdbid, mc):
elem
[
'end'
][
'residue_number'
]
=
elem
[
'seq_end'
]
elem
[
'start'
][
'author_residue_number'
]
=
elem
[
'auth_start'
]
elem
[
'end'
][
'author_residue_number'
]
=
elem
[
'auth_end'
]
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
if
elem
[
'auth_start_icode'
]
else
elem
[
'auth_start_icode'
]
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
if
elem
[
'auth_end_icode'
]
else
elem
[
'auth_end_icode'
]
del
elem
[
'seq_start'
]
del
elem
[
'seq_end'
]
...
...
@@ -1381,8 +1381,8 @@ def get_best_isoforms(pdbid, mc):
elem
[
'end'
][
'residue_number'
]
=
elem
[
'seq_end'
]
elem
[
'start'
][
'author_residue_number'
]
=
elem
[
'auth_start'
]
elem
[
'end'
][
'author_residue_number'
]
=
elem
[
'auth_end'
]
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
if
elem
[
'auth_start_icode'
]
else
elem
[
'auth_start_icode'
]
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
if
elem
[
'auth_end_icode'
]
else
elem
[
'auth_end_icode'
]
del
elem
[
'seq_start'
]
del
elem
[
'seq_end'
]
...
...
@@ -1575,8 +1575,8 @@ def get_nf90(pdbid, mc):
elem
[
'end'
][
'residue_number'
]
=
elem
[
'seq_end'
]
elem
[
'start'
][
'author_residue_number'
]
=
elem
[
'auth_start'
]
elem
[
'end'
][
'author_residue_number'
]
=
elem
[
'auth_end'
]
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
if
elem
[
'auth_start_icode'
]
else
elem
[
'auth_start_icode'
]
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
if
elem
[
'auth_end_icode'
]
else
elem
[
'auth_end_icode'
]
del
elem
[
'seq_start'
]
del
elem
[
'seq_end'
]
...
...
@@ -1667,8 +1667,8 @@ def get_nf90_taxonomy(pdbid, mc):
elem
[
'end'
][
'residue_number'
]
=
elem
[
'seq_end'
]
elem
[
'start'
][
'author_residue_number'
]
=
elem
[
'auth_start'
]
elem
[
'end'
][
'author_residue_number'
]
=
elem
[
'auth_end'
]
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
if
elem
[
'auth_start_icode'
]
else
elem
[
'auth_start_icode'
]
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
if
elem
[
'auth_end_icode'
]
else
elem
[
'auth_end_icode'
]
elem
[
'identifier'
]
=
elem
[
'name'
]
del
elem
[
'seq_start'
]
...
...
@@ -1754,8 +1754,8 @@ def get_homologene_nf90(pdbid, mc):
elem
[
'end'
][
'residue_number'
]
=
elem
[
'seq_end'
]
elem
[
'start'
][
'author_residue_number'
]
=
elem
[
'auth_start'
]
elem
[
'end'
][
'author_residue_number'
]
=
elem
[
'auth_end'
]
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
elem
[
'start'
][
'author_insertion_code'
]
=
elem
[
'auth_start_icode'
].
rstrip
()
if
elem
[
'auth_start_icode'
]
else
elem
[
'auth_start_icode'
]
elem
[
'end'
][
'author_insertion_code'
]
=
elem
[
'auth_end_icode'
].
rstrip
()
if
elem
[
'auth_end_icode'
]
else
elem
[
'auth_end_icode'
]
del
elem
[
'seq_start'
]
del
elem
[
'seq_end'
]
...
...
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