Commit 2d7c33d3 authored by Lukas Pravda's avatar Lukas Pravda
Browse files

improve testing

parent 30faff7a
......@@ -8,8 +8,8 @@
<!-- MOL* -->
<link rel="stylesheet" type="text/css"
href="https://wwwdev.ebi.ac.uk/pdbe/pdb-component-library/css/pdbe-molstar-light-0.1.0.css">
<script src="https://wwwdev.ebi.ac.uk/pdbe/pdb-component-library/js/pdbe-molstar-plugin-0.1.2.js"></script>
href="https://wwwdev.ebi.ac.uk/pdbe/pdb-component-library/v1.0/css/molstar-light-0.0.1.css">
<script src="https://wwwdev.ebi.ac.uk/pdbe/pdb-component-library/v1.0/js/molstar-0.0.1.js"></script>
<!-- Web component polyfill (only loads what it needs) -->
<script src="https://cdn.jsdelivr.net/npm/@webcomponents/webcomponentsjs/webcomponents-lite.js" charset="utf-8">
......@@ -42,9 +42,9 @@
if (result.bmid === undefined) {
result['query'] =
`https://wwwdev.ebi.ac.uk/pdbe/model-server/v1/${result.pdbid}/residueSurroundings?&auth_asym_id=$${result.chain}&auth_seq_id=${result.resid}&radius=5&data_source=pdb-h`
`https://wwwdev.ebi.ac.uk/pdbe/coordinates/${result.pdbid}/ligandInteraction?&authAsymId=$${result.chain}&authSeqNumber=${result.resid}&radius=5&dataSource=hydrogens`
} else {
result['query'] = `https://wwwdev.ebi.ac.uk/pdbe/model-server/v1/${result.pdbid}?data_source=pdb-h`
result['query'] = `https://wwwdev.ebi.ac.uk/pdbe/coordinates/${result.pdbid}?dataSource=hydrogens`
}
if (result.chain !== undefined) result.chain = result.chain.toUpperCase();
......@@ -64,9 +64,9 @@
} else {
params = {
pdbid: '1cbs',
chain: 'A_1',
chain: 'A',
resid: 200,
query: "https://wwwdev.ebi.ac.uk/pdbe/model-server/v1/1cbs/residueSurroundings?&auth_asym_id=A_1&auth_seq_id=200&radius=5&data_source=pdb-h"
query: "https://wwwdev.ebi.ac.uk/pdbe/coordinates/1cbs/ligandInteraction?&authAsymId=$A&authSeqNumber=$200&radius=5&dataSource=hydrogens"
};
}
......@@ -79,6 +79,7 @@
var initParams = {
moleculeId: params.pdbid,
pdbeUrl: 'https://wwwdev.ebi.ac.uk/pdbe/',
loadMaps: true,
validationAnnotation: true,
domainAnnotation: true,
lowPrecisionCoords: true,
......@@ -88,21 +89,21 @@
subscribeEvents: true,
showPDBeLogo: false,
assemblyId: 'preferred', //'deposited'
selectInteraction: true,
// selectInteraction: false,
ligandView: {
auth_asym_Id: params.chain,
auth_seq_id: params.resid,
hydrogens: true
},
bgColor: {r:255, g:255, b:255},
backgroundColour: '0xFFFFFF',
//customColorList: [0xff0000, 0x0000ff],
//representationStyle: representationStyle//,
customData: {
url: `https://wwwdev.ebi.ac.uk/pdbe/model-server/v1/${params.pdbid}/residueSurroundings?&auth_asym_id=${params.chain}&auth_seq_id=${params.resid}&radius=5&data_source=pdb-h`,
url: `https://wwwdev.ebi.ac.uk/pdbe/coordinates/${params.pdbid}/ligandInteraction?&authAsymId=${params.chain}&authSeqNumber=${params.resid}&radius=5&dataSource=hydrogens`,
format: 'cif'
}
}
var pdbeMolstar = new PDBeMolstarPlugin();
var pdbeMolstar = new MolStarPdbeWrapper();
pdbeMolstar.render(document.getElementById('3dViewer'), initParams);
});
}());
......@@ -117,12 +118,12 @@
<div style="position: relative; float: left;">
<div id='3dViewer' style="position:relative; width: 500px;height: 500px;"></div>
</div>
<div style="position: relative; float: left;">
<!-- <div style="position: relative; float: left;">
<div id="rt 1" style="width: 500px; height: 500px; position: relative">
<pdb-ligand-env pdb-id="5e98" bound-molecule-id="bm1" zoom-on environment="dev"></pdb-ligand-env>
<pdb-ligand-env pdb-id="5e98" bound-molecule-id="bm1" zoom-on></pdb-ligand-env>
</div>
</div>
<!-- <div style="position: relative; float: left;">
<div style="position: relative; float: left;">
<div id="rt 1" style="width: 500px; height: 500px; position: relative">
<pdb-ligand-env pdb-id="5e98" bound-molecule-id="bm1" entity-id="3" zoom-on></pdb-ligand-env>
</div>
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment