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pdbe
web-components
pdb-ligand-env
Commits
9cd91f9a
Commit
9cd91f9a
authored
5 years ago
by
Lukas Pravda
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improve README
parent
2e534d0c
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9cd91f9a
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@@ -4,16 +4,15 @@ This is a web-component to display ligand structure in 2D along with its interac
## Component modes
### A) Display bound molecule and its interactions
*
Mode A: Display bound molecule and its interactions
*
Mode B: Display ligand and its interactions
*
Mode C: Display ligand (chemical component) only
### B) Display ligand and its interactions
### C) Display ligand (chemical component) only
<div
style=
"text-align:center;"
>
<img
src=
"https://www.ebi.ac.uk/pdbe-srv/pdbechem/image/showNew?code=CLR&size=400"
/>
<img
src=
"https://www.ebi.ac.uk/pdbe-srv/pdbechem/image/showNew?code=Y01&size=400"
/>
</div>
| Mode A | Mode B | Mode C |
|-------------------- | --------- | -------- |
|
<img
src=
"https://www.ebi.ac.uk/~lpravda/imgs/1cbs_REA_200_A.png"
/>
|
<img
src=
"https://www.ebi.ac.uk/~lpravda/imgs/3d12_bm1.png"
/>
|
<img
src=
"https://www.ebi.ac.uk/pdbe-srv/pdbechem/image/showNew?code=VIA&size=400"
/>
|
| 1cbs REA 200 A | 3D12 bm1 (
`2xGLC-2xBGC-LXZ-NGA-GL0`
)| wwPDB CCD - VIA
## Usage: web-component
...
...
@@ -23,16 +22,16 @@ This is a web-component to display ligand structure in 2D along with its interac
<pdb-interactions
pdb-id=
"3d12"
bound-molecule-id=
"bm1"
></pdb-interactions>
```
### Ligand interactions
###
B)
Ligand interactions
```
html
<ligand-display
pdb-id=
"1cbs"
pdb-res-id=
"200"
pdb-chain-id=
"A"
></ligand-display>
```
### Ligand/chemical component
###
C)
Ligand/chemical component
```
html
<ligand-display
pdb-res-name=
"CLR"
zoom
></ligand-display>
<ligand-display
pdb-res-name=
"CLR"
zoom
-on
></ligand-display>
```
## Usage: Data injection
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