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pdbe
web-components
pdb-ligand-env
Commits
ad6c3272
Commit
ad6c3272
authored
Oct 25, 2020
by
Lukas Pravda
Browse files
update molstar in the example
parent
959b2059
Changes
1
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1 changed file
with
16 additions
and
21 deletions
+16
-21
dependencies/index.html
dependencies/index.html
+16
-21
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dependencies/index.html
View file @
ad6c3272
...
...
@@ -8,8 +8,8 @@
<!-- MOL* -->
<link
rel=
"stylesheet"
type=
"text/css"
href=
"https://www
dev
.ebi.ac.uk/pdbe/pdb-component-library/
v1.0/css/molstar-light-0.0.1
.css"
>
<script
src=
"https://www
dev
.ebi.ac.uk/pdbe/pdb-component-library/
v1.0/js/molstar-0.0.1
.js"
></script>
href=
"https://www.ebi.ac.uk/pdbe/pdb-component-library/
css/pdbe-molstar-1.1.0
.css"
>
<script
src=
"https://www.ebi.ac.uk/pdbe/pdb-component-library/
js/pdbe-molstar-plugin-1.1.0
.js"
></script>
<!-- Web component polyfill (only loads what it needs) -->
<script
src=
"https://cdn.jsdelivr.net/npm/@webcomponents/webcomponentsjs/webcomponents-lite.js"
charset=
"utf-8"
>
...
...
@@ -42,9 +42,9 @@
if
(
result
.
bmid
===
undefined
)
{
result
[
'
query
'
]
=
`https://www
dev
.ebi.ac.uk/pdbe/
coordinates
/
${
result
.
pdbid
}
/
ligand
Interaction?
&
auth
A
sym
I
d=$
$
{
result
.
chain
}
&auth
SeqNumber
=
${
result
.
resid
}
&radius=5&data
S
ource=
hydrogens
`
`https://www.ebi.ac.uk/pdbe/
model-server/v1
/
${
result
.
pdbid
}
/
residue
Interaction?auth
_a
sym
_i
d=
${
result
.
chain
}
&auth
_seq_id
=
${
result
.
resid
}
&radius=5&data
_s
ource=
pdb-h
`
}
else
{
result
[
'
query
'
]
=
`https://www
dev
.ebi.ac.uk/pdbe/
coordinates
/
${
result
.
pdbid
}
?data
S
ource=
hydrogens
`
result
[
'
query
'
]
=
`https://www.ebi.ac.uk/pdbe/
model-server/v1
/
${
result
.
pdbid
}
/full
?data
_s
ource=
pdb-h
`
}
if
(
result
.
chain
!==
undefined
)
result
.
chain
=
result
.
chain
.
toUpperCase
();
...
...
@@ -64,9 +64,9 @@
}
else
{
params
=
{
pdbid
:
'
1cbs
'
,
chain
:
'
A
'
,
chain
:
'
A
_1
'
,
resid
:
200
,
query
:
"
https://www
dev
.ebi.ac.uk/pdbe/
coordinates/1cbs/ligand
Interaction?
&
auth
A
sym
Id=$A&authSeqNumber=$
200&radius=5&data
S
ource=
hydrogens
"
query
:
"
https://www.ebi.ac.uk/pdbe/
model-server/v1/1cbs/residue
Interaction?auth
_a
sym
_id=A_1&auth_seq_id=
200&radius=5&data
_s
ource=
pdb-h
"
};
}
...
...
@@ -78,32 +78,27 @@
var
initParams
=
{
moleculeId
:
params
.
pdbid
,
pdbeUrl
:
'
https://wwwdev.ebi.ac.uk/pdbe/
'
,
loadMaps
:
true
,
validationAnnotation
:
true
,
domainAnnotation
:
true
,
pdbeUrl
:
'
https://www.ebi.ac.uk/pdbe/
'
,
loadMaps
:
false
,
bgColor
:
{
r
:
255
,
g
:
250
,
b
:
250
},
lowPrecisionCoords
:
true
,
isExpanded
:
false
,
hideControls
:
true
,
showLogs
:
false
,
subscribeEvents
:
true
,
showPDBeLogo
:
false
,
assemblyId
:
'
preferred
'
,
//'deposited'
// selectInteraction: false,
subscribeEvents
:
true
,
ligandView
:
{
auth_asym_Id
:
params
.
chain
,
auth_seq_id
:
params
.
resid
,
auth_asym_id
:
params
.
chain
,
hydrogens
:
true
},
backgroundColour
:
'
0xFFFFFF
'
,
//customColorList: [0xff0000, 0x0000ff],
//representationStyle: representationStyle//,
customData
:
{
url
:
`https://wwwdev.ebi.ac.uk/pdbe/coordinates/
${
params
.
pdbid
}
/ligandInteraction?&authAsymId=
${
params
.
chain
}
&authSeqNumber=
${
params
.
resid
}
&radius=5&dataSource=hydrogens`
,
format
:
'
cif
'
}
}
var
pdbeMolstar
=
new
Mol
S
tarP
dbeWrapper
();
var
pdbeMolstar
=
new
PDBe
Mol
s
tarP
lugin
();
pdbeMolstar
.
render
(
document
.
getElementById
(
'
3dViewer
'
),
initParams
);
});
}());
...
...
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