From 13ea8a85b7e1e3e90033466203ccdf63e4424ef5 Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Mon, 18 Mar 2013 14:39:52 +0000
Subject: [PATCH] input_id for hive jobfactory instances has changed to
input_id_template. reflecting this
---
modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm | 2 +-
modules/Bio/EnsEMBL/Pipeline/PipeConfig/Flatfile_conf.pm | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm
index 9ddf74a688..7d92c09b72 100644
--- a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm
+++ b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm
@@ -44,7 +44,7 @@ sub pipeline_analyses {
inputcmd => 'find '.$self->o('base_path').q{ -type f -name '*.dat.gz'},
column_names => ['file'],
randomize => 1,
- input_id => '{ file => "#file#" }'
+ input_id_template => '{ file => "#file#" }'
},
-input_ids => [ {} ],
-flow_into => {
diff --git a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Flatfile_conf.pm b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Flatfile_conf.pm
index a5e3210a45..3c6bc61515 100644
--- a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Flatfile_conf.pm
+++ b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Flatfile_conf.pm
@@ -70,7 +70,7 @@ sub pipeline_analyses {
-module => 'Bio::EnsEMBL::Pipeline::Flatfile::DumpTypeFactory',
-parameters => {
types => $self->o('types'),
- input_id => { species => '#species#', type => '#type#' },
+ input_id_template => '{ species => "#species#", type => "#type#" }',
fan_branch_code => 2
},
-flow_into => { 2 => ['DumpFlatfile', 'ChecksumGenerator'] },
--
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