From 1a8a617b80d46c7ee38cbe5419f8cb4a815853f8 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Tue, 30 Apr 2013 15:10:39 +0000
Subject: [PATCH] if all you want to test is if a transcript has a mapping,
don't add any additional conditions
---
modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm b/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm
index a1a73bee57..5386b1ef6d 100644
--- a/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm
+++ b/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm
@@ -784,7 +784,7 @@ sub non_mapped_transcript_rescore {
'Need a Bio::EnsEMBL::IdMapping::MappingList of transcripts.');
}
- # create of lookup hash of mapped source transcripts to target
+ # create a lookup hash of mapped source transcripts to target
# transcripts
my %transcript_lookup =
map { $_->source => $_->target }
@@ -808,7 +808,7 @@ sub non_mapped_transcript_rescore {
foreach my $target_tr (@target_transcripts) {
my $mapped_target = $transcript_lookup{ $source_tr->id };
- if ( $mapped_target and ( $mapped_target == $target_tr->id ) ) {
+ if ( $mapped_target ) {
$found_mapped = 1;
last TR;
}
@@ -828,4 +828,5 @@ sub non_mapped_transcript_rescore {
1 );
} ## end sub non_mapped_transcript_rescore
+
1;
--
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