From 2d16cb43e4143f63002a632e801fd29ab08133b8 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Mon, 3 Jun 2013 10:44:55 +0000
Subject: [PATCH] do not insert unliked xrefs as go_xrefs there should not be
any, and we end up adding data which is not an ontology
---
misc-scripts/xref_mapping/XrefMapper/DirectXrefs.pm | 10 ----------
1 file changed, 10 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/DirectXrefs.pm b/misc-scripts/xref_mapping/XrefMapper/DirectXrefs.pm
index b20efb4e2d..df0e966312 100644
--- a/misc-scripts/xref_mapping/XrefMapper/DirectXrefs.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/DirectXrefs.pm
@@ -61,13 +61,6 @@ IOS
my $ins_ix_sth = $self->get_ins_ix_sth();
- my $ins_go_no_source_sql = (<<"IG2");
-INSERT INTO go_xref (object_xref_id, linkage_type)
- VALUES (?,?)
-IG2
- my $insert_go_sth = $self->xref->dbc->prepare($ins_go_no_source_sql);
-
-
my $stable_sql=(<<"SQL");
SELECT so.name, dx.general_xref_id, s.internal_id, dx.ensembl_stable_id , dx.linkage_xref
FROM source so, xref x, TYPE_direct_xref dx left join TYPE_stable_id s on s.stable_id = dx.ensembl_stable_id
@@ -123,9 +116,6 @@ SQL
$ins_ix_sth->execute($object_xref_id);
push @master_xref_ids, $xref_id;
}
- if(defined($linkage_type) and $linkage_type ne ""){
- $insert_go_sth->execute($object_xref_id, $linkage_type);
- }
$self->process_dependents({master_xrefs => \@master_xref_ids,
max_object_xref_id => \$object_xref_id,
dup_count => \$duplicate_dependent_count,
--
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