From 2d630640f3b4fbe53235af47cd9608ada488d0e6 Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Thu, 30 May 2013 09:37:37 +0000
Subject: [PATCH] updating docs
---
modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm | 2 ++
1 file changed, 2 insertions(+)
diff --git a/modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm
index 217ef3506a..dcee947066 100644
--- a/modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm
@@ -64,6 +64,7 @@ use base qw( Bio::EnsEMBL::DBSQL::BaseAdaptor );
Arg [1] : String, name of term, or SQL pattern
Arg [2] : (optional) String, name of ontology
+ Arg [3] : (optional) Boolean, search through obsolete terms as well
Description : Fetches ontology term(s) given a name, a synonym, or a
SQL pattern like "%splice_site%"
@@ -147,6 +148,7 @@ WHERE ( term.name LIKE ? OR synonym.name LIKE ? ));
=head2 fetch_by_accession
Arg [1] : String
+ Arg [2] : (optional) Boolean, search through obsolete terms as well
Description : Fetches an ontology term given an accession.
--
GitLab