diff --git a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/NcbiBlastReIndexer_conf.pm b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/NcbiBlastReIndexer_conf.pm index 78fc86c947d2adccfe60874805cf0843d19c7afd..c40225337374b069197c00f0a859ffc6f562ae96 100644 --- a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/NcbiBlastReIndexer_conf.pm +++ b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/NcbiBlastReIndexer_conf.pm @@ -12,6 +12,7 @@ sub default_options { # inherit other stuff from the base class %{ $self->SUPER::default_options() }, + # 'registry' => '', # registry file still needed for all species # 'fa_dir' => '', # locate where the current fa files to look for are # 'base_path' => '', # where do you want your files @@ -77,6 +78,12 @@ sub pipeline_wide_parameters { }; } +# override the default method, to force an automatic loading of the registry in all workers +sub beekeeper_extra_cmdline_options { + my $self = shift; + return "-reg_conf ".$self->o("registry"); +} + sub resource_classes { my $self = shift; return {