From 593f110bb1f6aa069025ed1aaa700df051e2ca66 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Thu, 2 May 2013 09:29:11 +0000
Subject: [PATCH] reverting back to previous code, works fine once you use the
correct mapping list
---
modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm b/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm
index 5386b1ef6d..e35a31432e 100644
--- a/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm
+++ b/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm
@@ -808,7 +808,7 @@ sub non_mapped_transcript_rescore {
foreach my $target_tr (@target_transcripts) {
my $mapped_target = $transcript_lookup{ $source_tr->id };
- if ( $mapped_target ) {
+ if ( $mapped_target && $mapped_target == $target_tr->id ) {
$found_mapped = 1;
last TR;
}
@@ -829,4 +829,5 @@ sub non_mapped_transcript_rescore {
} ## end sub non_mapped_transcript_rescore
+
1;
--
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