From 7c42a86e6c632a5933e5496731c16416f40101d4 Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Thu, 30 May 2013 09:33:41 +0000
Subject: [PATCH] Transcripts have no source. Get from the gene
---
modules/Bio/EnsEMBL/Transcript.pm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/Transcript.pm b/modules/Bio/EnsEMBL/Transcript.pm
index fb87877b40..93c5c18e7d 100755
--- a/modules/Bio/EnsEMBL/Transcript.pm
+++ b/modules/Bio/EnsEMBL/Transcript.pm
@@ -2849,7 +2849,7 @@ sub summary_as_hash {
$summary_ref->{'logic_name'} = $self->analysis->logic_name();
my $parent_gene = $self->get_Gene();
$summary_ref->{'Parent'} = $parent_gene->stable_id;
- $summary_ref->{'source'} = $self->source() || $parent_gene->source();
+ $summary_ref->{'source'} = $parent_gene->source();
return $summary_ref;
}
--
GitLab