From 8ec1d6baec20dc2953ac68f071bc295650b93e30 Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Tue, 19 Mar 2013 13:39:03 +0000
Subject: [PATCH] removing format and adding type. also doing -driver in the
newer way
---
.../EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm
index 36f4a48aab..1a474a817b 100644
--- a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm
+++ b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm
@@ -8,7 +8,7 @@ use base ('Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf');
sub default_options {
my ($self) = @_;
- return {
+ my $h = {
# inherit other stuff from the base class
%{ $self->SUPER::default_options() },
@@ -17,12 +17,11 @@ sub default_options {
### Defaults
- pipeline_name => 'flatfile_dump_check_'.$self->o('format'),
+ pipeline_name => 'flatfile_dump_check_'.$self->o('type'),
- pipeline_db => {
- -driver => 'sqlite',
- }
};
+ $h->{pipeline_db}->{-driver} = 'sqlite';
+ return $h;
}
sub pipeline_create_commands {
--
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