From b3afde915018029339bad1747277abde6be08c9f Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Mon, 15 Apr 2013 11:54:16 +0000
Subject: [PATCH] [ENSCORESW-399] Fixing an issue reported from Steve Moss. We
cause an exception because we do not check if we can project the cDNA
location. Sometimes it is undefined.
---
modules/Bio/EnsEMBL/Transcript.pm | 2 ++
1 file changed, 2 insertions(+)
diff --git a/modules/Bio/EnsEMBL/Transcript.pm b/modules/Bio/EnsEMBL/Transcript.pm
index 4967a72d83..8605958235 100755
--- a/modules/Bio/EnsEMBL/Transcript.pm
+++ b/modules/Bio/EnsEMBL/Transcript.pm
@@ -1707,6 +1707,7 @@ sub five_prime_utr_Feature {
my ($self) = @_;
my ($start, $end);
my $cdna_coding = $self->cdna_coding_start();
+ return unless $cdna_coding;
my ($genomic_pos) = $self->cdna2genomic($cdna_coding, $cdna_coding);
if($self->strand() == 1) {
$start = $self->seq_region_start();
@@ -1749,6 +1750,7 @@ sub three_prime_utr_Feature {
my ($self) = @_;
my ($start, $end);
my $cdna_coding = $self->cdna_coding_end();
+ return unless $cdna_coding;
my ($genomic_pos) = $self->cdna2genomic($cdna_coding, $cdna_coding);
if($self->strand() == 1) {
$end = $self->seq_region_end();
--
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