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UniProt Public
UniFIRE
Commits
ddd14b79
Commit
ddd14b79
authored
Jul 10, 2020
by
Hermann Zellner
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Add check for existence of file in run_unifire_docker.sh
parent
b60ce6c2
Changes
2
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2 changed files
with
5 additions
and
2 deletions
+5
-2
docker/bin/run_unifire_docker.sh
docker/bin/run_unifire_docker.sh
+1
-1
docker/scripts/unifire-workflow.sh
docker/scripts/unifire-workflow.sh
+4
-1
No files found.
docker/bin/run_unifire_docker.sh
View file @
ddd14b79
...
...
@@ -23,7 +23,7 @@ infile=""
outdir
=
""
workdir
=
""
cleanworkdir
=
0
docker_version
=
"2020.4"
docker_version
=
"2020.4
.1
"
predictionfiles
=
"predictions_unirule.out predictions_arba.out predictions_unirule-pirsr.out"
function
usage
()
{
...
...
docker/scripts/unifire-workflow.sh
View file @
ddd14b79
...
...
@@ -50,7 +50,10 @@ ownership=`stat -c "%u:%g" ${VOLUME}/proteins.fasta`
for
outfile
in
proteins_lineage.fasta proteins_lineage-ipr.xml proteins_lineage-ipr-urml.xml predictions_unirule.out
\
predictions_arba.out predictions_unirule-pirsr.out
seq
aln
do
chown
-R
${
ownership
}
${
VOLUME
}
/
${
outfile
}
if
[[
-e
${
VOLUME
}
/
${
outfile
}
]]
then
chown
-R
${
ownership
}
${
VOLUME
}
/
${
outfile
}
fi
done
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