GitLab

TRM-24657 & TRM-25489 Migration to java11

Closes TRM-24657

See merge request uniprot-public/unifire!12

Older version of 3.7 was not able to resolve ClassUtils.isAssignable(javaType, Number.class) and causing NullPointerException

2021.2

See merge request uniprot-public/unifire!21

Log exceptions

See merge request uniprot-public/unifire!19

Made InterProXmlToFactConverter usable as a stand-alone tool Application

Set default version of the container image to 2021.1.1

See merge request uniprot-public/unifire!18

TRM-24976 Disable PIRSRAppIntegrationTest

Closes TRM-24976

See merge request uniprot-public/unifire!17

Manage resource with try-with-resources

See merge request uniprot-public/unifire!16

Removed unused field

Add integration tests for Unifire and PIRSR app

Closes TRM-24976

See merge request uniprot-public/unifire!15

Also, separate failure test suite as UnifireAppFailureCasesIntegrationTests

2021.1

See merge request uniprot-public/unifire!14

 Updated InterProScan version
 Extracted InterProScan version to variable
 Create version independenct symlink to InterProScan root folder
 Default image version: 2021.1

Interproscan 5.47 82.0

See merge request uniprot-public/unifire!13

Singularity podman

See merge request uniprot-public/unifire!11

TRM-24502: Added fetchTaxonomicLineage.py script, which contains proper parsing of command line arguments through argparse.

TRM-23755 PIRSRApp Fact input

See merge request uniprot-public/unifire!7

- PIRSRRunner: Extracted and simplified the logic to merge facts, in this case adding PositionalProteinSignature
- Avoid duplications in the facts coming from FactMerger

Add check for existence of file in run_unifire_docker.sh

See merge request uniprot-public/unifire!10

Updated usage information of run_unifire_docker.sh to display dynamically the default version of the docker image

Trm 23751 arba

See merge request uniprot-public/unifire!9

- Download latest rules from ARBA instead of SAAS
- Use ARBA rules instead of SAAS rules in unifire-workflow.sh

2020 03

See merge request uniprot-public/unifire!8

TRM-23819 unifire docker

See merge request uniprot-public/unifire!6

- Owner and group of predition output files is set the same as the input file
- Added wrapper script to run the unifire docker image

Trm 23844 multiple xrefs per protein

See merge request uniprot-public/unifire!5