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Updated Change log (markdown) authored by Magali Ruffier's avatar Magali Ruffier
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Please note all dates are expressed as [ISO-8601](http://en.wikipedia.org/wiki/ISO_8601).
# 4.5 - 2016/03/09
# 4.5 - 2016-03-09
* New Regulation endpoint `[/ld/:species/region/]` to compute LD values between all pairs of variants in a defined region
* New variation endpoint `[/transcript_haplotypes]` to compute observed transcript haplotype sequences based on phased genotype data
* `[/info/external_dbs/]` now allows restricting the list of external database entries to a specified species
* GA4GH endpoints updated to version 0.6.0
# 4.4 - 2015/12/08
# 4.4 - 2015-12-08
## New features
* `[/sequence/id]` endpoint now allows start and end parameters allowing trimming of returned sequence
* New Information endpoint `[info/variation/populations]` list of populations for a given species
# 4.3 - 2015/07/15
# 4.3 - 2015-07-15
## New features
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* the `[/overlap]` endpoint does not include failed variants
# 4.2 - 2015/05/21
# 4.2 - 2015-05-21
## New features
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* `[/ga4gh]` fix for paging of results.
# 4.1 - 2015/03/12
# 4.1 - 2015-03-12
## New features
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* `[/vep]` endpoint properly prioritises user parameters over defaults
# 4.0 - 2014/12/03
# 4.0 - 2014-12-03
## New features
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* `orthoXML` format added for `[/homology]` endpoints
* `coordinate_system` field changed to `coord_system` in `[/info/assembly_info]` endpoint
# 3.1.0 - 2014/10/02
# 3.1.0 - 2014-10-02
## New Features:
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* `Parent` field added to `[/overlap/translation]` endpoints to retrieve corresponding Transcript
* `version` for stable_id field added to `[/overlap]` endpoints
# 3.0.1 - 2014/08/22
# 3.0.1 - 2014-08-22
## New Features:
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* Add line break for sequences
* Better error handling in plain type
# 3.0.0 - 2014/07/08
# 3.0.0 - 2014-07-08
## New Features:
* `[/vep]` output has been changed to be more json compliant and hierarchic
# 2.0.0 - 2014/06/26
# 2.0.0 - 2014-06-26
A transition from beta to a more stable interface for users, better documentation and more functionality. More features will appear over time, but these will not interfere with the existing interface wherever possible.
......@@ -136,7 +136,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.6.0 - 2014/02/26
# 1.6.0 - 2014-02-26
## New Features:
......@@ -152,13 +152,13 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.5.1 - 2013/12/04
# 1.5.1 - 2013-12-04
## Bugfixes:
* Removed deprecated methods from Compara
# 1.5.0 - 2013/12/04
# 1.5.0 - 2013-12-04
## New Features:
......@@ -182,7 +182,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.4.4 - 2013/11/07
# 1.4.4 - 2013-11-07
## Bugfixes
......@@ -191,7 +191,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.4.3 - 2013/11/05
# 1.4.3 - 2013-11-05
## Bugfixes:
......@@ -200,7 +200,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.4.2 - 2013/09/23
# 1.4.2 - 2013-09-23
## Bugfixes:
......@@ -208,7 +208,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.4.1 - 2013/09/09
# 1.4.1 - 2013-09-09
## Bugfixes:
......@@ -216,7 +216,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.4.0 - 2013/09/03
# 1.4.0 - 2013-09-03
## New Features:
......@@ -246,7 +246,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.3.2 - 2013/04/16
# 1.3.2 - 2013-04-16
## New Features:
......@@ -258,7 +258,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.3.1 - 2013/04/15
# 1.3.1 - 2013-04-15
##Bugfixes:
......@@ -266,7 +266,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.3.0 - 2013/04/09
# 1.3.0 - 2013-04-09
## New Features:
......@@ -293,7 +293,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.2.0 - 2013/02/15
# 1.2.0 - 2013-02-15
## New Features:
......@@ -313,7 +313,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.1.2 - 2012/10/24
# 1.1.2 - 2012-10-24
## Output:
......@@ -325,7 +325,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.1.1 - 2012/10/24
# 1.1.1 - 2012-10-24
## Bugfixes:
......@@ -335,7 +335,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.1.0 - 2012/10/23
# 1.1.0 - 2012-10-23
## New Features:
......@@ -372,7 +372,7 @@ A transition from beta to a more stable interface for users, better documentatio
---
# 1.0.0 - 2012/09/05
# 1.0.0 - 2012-09-05
* Initial revision of REST API
* Support for comparative genomics, cross references, ID lookup, mapping coordinates, sequences & variations
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