GitLab

Manuscript submission system project (Europe PMC plus)

Deployed on https://latest.visual-framework.dev/ and https://stable.visual-framework.dev/ NOTE - DO NOT COMMIT ANYTHING IN THIS REPO, THIS IS MIRROR REPO OF GITHUB. PLEASE COMMIT CHANGES IN GITHUB ONLY.

This project contains an API that serves as a proxy of elasticsearch for the interface. It handles the caching, usage statistics, contexts and standardisation of properties.

Image to update FPSim2 fingerprints table. It can be used in all our services.

A nextflow pipeline for polygenic score calculation

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

Web components shared between apps. Can be used as a git submodule, while we improve the packaging.

Webin command line submission interface.

Creates pages for embl.org/jobs/position/{id}

RNAcentral website source code

ETL to migrate data from the old database to the new one

This project contains the code for the EUbOPEN website.

This is the codebase for PDBe-KB REST API service

Tools to load data into the ChEMBl Elastic Search cluster, and replicate it.

Ensembl 2020 client

Flat file format specification and java API for sequence data.