Explore projects

ChEBI database management

This project contains an API that serves as a proxy of elasticsearch for the interface. It handles the caching, usage statistics, contexts and standardisation of properties.

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

URL resolver service

This project contains the code for the EUbOPEN website.

Manuscript submission system project (Europe PMC plus)

Tools to load data into the ChEMBl Elastic Search cluster, and replicate it.

Package that handles retrieval of data from elasticsearch through the ES Proxy service.

Ensembl 2020 client

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

This project defines a delayed job that runs biological sequence searches (BLAST).

Generates metadata tags to be used in the web apps.

SMBGC detection tool