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This script provides a number of user enhancements to the default interface of RT at EBI, to enable quicker and easier management of tickets.

ETL to migrate data from the old database to the new one

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

Ensembl 2020 client

SMBGC detection tool

Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)

Frontend code for the new version of ChEBI

Manuscript submission system project (Europe PMC plus)

A basic Python-based EGA download client

A library for locating and annotating plain text in HTML

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

A project to host reports and interactive visualisations for Europe PMC

In this repository, I am going to share all the data and codes required to reproduce my library gene selection steps for the 2D CRISPR Project (Colorectal and Breast cancer cell lines)

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens