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CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

A library for locating and annotating plain text in HTML

SMBGC detection tool

In this repository, I am going to share all the data and codes required to reproduce my library gene selection steps for the 2D CRISPR Project (Colorectal and Breast cancer cell lines)

Manuscript submission system project (Europe PMC plus)

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

Benchmarking dataset of PDB structures (various molecule types, experimental methods, weird cases etc.).

Ensembl 2020 client

This script provides a number of user enhancements to the default interface of RT at EBI, to enable quicker and easier management of tickets.

Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)

Frontend code for the new version of ChEBI

A basic Python-based EGA download client

Singularity in HPC

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.