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Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

SMBGC detection tool

In this repository, I am going to share all the data and codes required to reproduce my library gene selection steps for the 2D CRISPR Project (Colorectal and Breast cancer cell lines)

A library for locating and annotating plain text in HTML

A project to host reports and interactive visualisations for Europe PMC

This script provides a number of user enhancements to the default interface of RT at EBI, to enable quicker and easier management of tickets.

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

Flat file format specification and java API for sequence data.

Benchmarking dataset of PDB structures (various molecule types, experimental methods, weird cases etc.).

Ensembl 2020 client

A basic Python-based EGA download client

Manuscript submission system project (Europe PMC plus)

Singularity in HPC