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Flat file format specification and java API for sequence data.

SMBGC detection tool

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

A basic Python-based EGA download client

Singularity in HPC

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

Ensembl 2020 client

ChEBI database management

Frontend code for the new version of ChEBI

In this repository, I am going to share all the data and codes required to reproduce my library gene selection steps for the 2D CRISPR Project (Colorectal and Breast cancer cell lines)

Wordpress deployment setup repo

Quick demonstration of server that displays indications sections of DailyMed structured product labels (SPLs, i.e. drug labels). The SPLs are exposed in their own URLs which serve as a static location so that they can be annotated with hypothes.is.