GitLab

This script provides a number of user enhancements to the default interface of RT at EBI, to enable quicker and easier management of tickets.

A library for locating and annotating plain text in HTML

ETL to migrate data from the old database to the new one

No longer needed, as the code was merged with pdb-ligand-env component. This repository can be removed.

A project to host reports and interactive visualisations for Europe PMC

Interactive 2D display of ligands and their environment in protein structures. The testing version of the component is available from: http://pdbe.gitdocs.ebi.ac.uk/web-components/ligand-env

A JavaScript library for highlighting text based on the query in the lucene/solr query syntax

Small molecules chemistry toolkit. Documentation is available at Gitlab pages: https://pdbe.gitdocs.ebi.ac.uk/ccdutils/

PUBLIC project to provide public user scripts.

SMBGC detection tool

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

This is the codebase for PDBe-KB REST API service

Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)

Frontend code for the new version of ChEBI