FunPDBe Validator client that can parse and validate FunPDBe JSON files

Static pages for the main www.ebi.ac.uk site

NOTE - DO NOT COMMIT ANYTHING IN THIS REPO, THIS IS MIRROR REPO OF GITHUB. PLEASE COMMIT CHANGES IN GITHUB ONLY.

Webin command line submission interface.

Small molecules chemistry toolkit. Documentation is available at Gitlab pages: https://pdbe.gitdocs.ebi.ac.uk/ccdutils/

BioBert model trained on EPMC dataset for NER task

This script provides a number of user enhancements to the default interface of RT at EBI, to enable quicker and easier management of tickets.

No longer needed, as the code was merged with pdb-ligand-env component. This repository can be removed.

EuropePMC Corpus of 300 articles for core entity types

PUBLIC project to provide public user scripts.

Interactive 2D display of ligands and their environment in protein structures. The testing version of the component is available from: http://pdbe.gitdocs.ebi.ac.uk/web-components/ligand-env

This is the codebase for PDBe-KB REST API service

Common library to interact with fire DOS V3 API

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

Schema for the Ensembl ontology database