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patch for BaseParser.pm

Marek Szuba requested to merge xref_sprint_patch104 into feature/xref_sprint

Created by: tgrego

Description

Following the discussion in ENSCORESW-3380, this patches a likely candidate for an issue on BaseParser.pm. A full scale pipeline test run named xref_testing_99_104_sprint has been set up running on this patched branch.

Use case

See ENSCORESW-3380

Benefits

Fix unlinked_entries issues in feature/xref_sprint.

Possible Drawbacks

none

Testing

Have you added/modified unit tests to test the changes?

No

If so, do the tests pass/fail?

Have you run the entire test suite and no regression was detected?

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