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E ensembl-gh-mirror
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ensembl-gh-mirror
Issues

Open 7
Closed 56
All 63

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Configure local ensembl-rest for GRCh37

ensembl-rest#258 · created May 31, 2018 by Marek Szuba
- CLOSED
- 2
updated Jun 01, 2018
Bus error/segfault on freebsd

Bio-DB-HTS#76 · created May 03, 2018 by Marek Szuba
- CLOSED
- 0
updated Feb 22, 2019
Illegal versioning scheme

Bio-DB-HTS#75 · created May 01, 2018 by Marek Szuba
- CLOSED
- 1
updated Apr 26, 2019
Bio__DB__HTS__VCFfile now defined twice

Bio-DB-HTS#72 · created Apr 30, 2018 by Marek Szuba
- CLOSED
- 1
updated May 01, 2018
Dockerfile rest service

ensembl-rest#245 · created Mar 21, 2018 by Marek Szuba
- CLOSED
- 4
updated Jun 29, 2018
VCF/BCF returning the raw header

Bio-DB-HTS#70 · created Mar 21, 2018 by Marek Szuba enhancement
- CLOSED
- 1
updated Mar 21, 2018
Multiple, conflicting, index memory release attempts may lead to segfault

Bio-DB-HTS#67 · created Mar 19, 2018 by Marek Szuba bug
- CLOSED
- 14
updated Mar 20, 2018
Add memory leak cases to test suite

Bio-DB-HTS#66 · created Mar 19, 2018 by Marek Szuba enhancement
- CLOSED
- 6
updated Mar 20, 2018
Ensure header single point of access via PP API

Bio-DB-HTS#65 · created Mar 16, 2018 by Marek Szuba bug
- 0
updated Mar 16, 2018
Travis to test with multiple htslib versions

Bio-DB-HTS#63 · created Mar 14, 2018 by Marek Szuba enhancement
- CLOSED
- 1
updated Mar 14, 2018
htslib 1.3.1 (and older) non-compatible header_read for SAM

Bio-DB-HTS#62 · created Mar 14, 2018 by Marek Szuba bug help wanted
- CLOSED
- 5
updated Mar 16, 2018
HTSfile::reindex with CRAM: renaming after sorting expects BAM

Bio-DB-HTS#60 · created Mar 05, 2018 by Marek Szuba
- CLOSED
- 1
updated Mar 06, 2018
Archives install script tied to master

Bio-DB-HTS#59 · created Mar 02, 2018 by Marek Szuba
- CLOSED
- 3
updated Mar 15, 2018
Does not support csi index

Bio-DB-HTS#57 · created Feb 08, 2018 by Marek Szuba
- CLOSED
- 9
updated Mar 05, 2018
Calling coverage on a BAM re-fetches the header every time

Bio-DB-HTS#56 · created Nov 20, 2017 by Marek Szuba enhancement
- 4
updated Mar 14, 2018
BCF indexing

Bio-DB-HTS#55 · created Jul 14, 2017 by Marek Szuba enhancement
- CLOSED
- 3
updated Apr 16, 2018
'missing SAM header' when opening SAM files

Bio-DB-HTS#54 · created Jul 11, 2017 by Marek Szuba bug
- CLOSED
- 1
updated Mar 13, 2018
Switch to using hisremote

Bio-DB-HTS#46 · created Jun 16, 2017 by Marek Szuba enhancement
- CLOSED
- 1
updated Jun 17, 2017
The install script fails with GNU Wget 1.12

Bio-DB-HTS#44 · created Jun 16, 2017 by Marek Szuba
- CLOSED
- 4
updated Jun 17, 2017
padded_alignment() produces invalid output

Bio-DB-HTS#40 · created Apr 24, 2017 by Marek Szuba bug
- 27
updated Sep 04, 2018

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