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ensembl-gh-mirror
Issues

Open 7
Closed 56
All 63

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

INSTALL.pl - use master.zip instead of git clone

Bio-DB-HTS#15 · created May 09, 2016 by Marek Szuba
- CLOSED
- 20
updated Aug 04, 2016
Memory leak: Bio::DB::HTS::Tabix - very reproducible

Bio-DB-HTS#17 · created May 18, 2016 by Marek Szuba bug
- CLOSED
- 20
updated May 20, 2016
Ancillary items from Bio-SamTools

Bio-DB-HTS#32 · created Aug 09, 2016 by Marek Szuba
- CLOSED
- 5
updated Aug 10, 2016
Why didn't you just rename the repo?

Bio-DB-HTS#31 · created Aug 04, 2016 by Marek Szuba
- CLOSED
- 2
updated Aug 05, 2016
Does Bio-HTS use ENA for CRAM tests?

Bio-DB-HTS#28 · created Jul 18, 2016 by Marek Szuba
- CLOSED
- 16
updated Oct 20, 2016
Looking for some examples of basic FASTA/Q handling with Bio::DB::HTS

Bio-DB-HTS#2 · created Jan 22, 2016 by Marek Szuba enhancement
- CLOSED
- 22
updated May 25, 2016
system exit codes not checked - silent install failures

Bio-DB-HTS#27 · created Jul 01, 2016 by Marek Szuba
- CLOSED
- 2
updated Aug 04, 2016
Switch to using hisremote

Bio-DB-HTS#46 · created Jun 16, 2017 by Marek Szuba enhancement
- CLOSED
- 1
updated Jun 17, 2017
The install script fails with GNU Wget 1.12

Bio-DB-HTS#44 · created Jun 16, 2017 by Marek Szuba
- CLOSED
- 4
updated Jun 17, 2017
Functionality to write bam file

Bio-DB-HTS#14 · created May 04, 2016 by Marek Szuba enhancement wontfix
- CLOSED
- 3
updated May 19, 2016
Calling coverage on a BAM re-fetches the header every time

Bio-DB-HTS#56 · created Nov 20, 2017 by Marek Szuba enhancement
- 4
updated Mar 14, 2018
Archives install script tied to master

Bio-DB-HTS#59 · created Mar 02, 2018 by Marek Szuba
- CLOSED
- 3
updated Mar 15, 2018
BCF indexing

Bio-DB-HTS#55 · created Jul 14, 2017 by Marek Szuba enhancement
- CLOSED
- 3
updated Apr 16, 2018
Does not support csi index

Bio-DB-HTS#57 · created Feb 08, 2018 by Marek Szuba
- CLOSED
- 9
updated Mar 05, 2018
Travis to test with multiple htslib versions

Bio-DB-HTS#63 · created Mar 14, 2018 by Marek Szuba enhancement
- CLOSED
- 1
updated Mar 14, 2018
Add memory leak cases to test suite

Bio-DB-HTS#66 · created Mar 19, 2018 by Marek Szuba enhancement
- CLOSED
- 6
updated Mar 20, 2018
HTSfile::reindex with CRAM: renaming after sorting expects BAM

Bio-DB-HTS#60 · created Mar 05, 2018 by Marek Szuba
- CLOSED
- 1
updated Mar 06, 2018
Split HTSLIB_DIR into HTSLIB_LIBDIR and HTSLIB_INCDIR

Bio-DB-HTS#30 · created Jul 29, 2016 by Marek Szuba wontfix
- CLOSED
- 6
updated Dec 07, 2016
htslib 1.3.1 (and older) non-compatible header_read for SAM

Bio-DB-HTS#62 · created Mar 14, 2018 by Marek Szuba bug help wanted
- CLOSED
- 5
updated Mar 16, 2018
Build failure under Fedora 23

Bio-DB-HTS#29 · created Jul 20, 2016 by Marek Szuba
- CLOSED
- 8
updated Aug 04, 2016

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