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  • Ruben Paz's avatar
    1928bf26
    FFtoGFF3 Refactor · 1928bf26
    Ruben Paz authored
    
    
    * Format & entrypoint
    
    * wip
    
    * Rules & tests
    
    * Add overlaping genes files
    
    * Add locus tag example
    
    * Adding the feature converter and updating the test to work for multiple files in a defined rule
    
    * Adding the feature converter and updating the test to work for multiple files in a defined rule
    
    * Adding map based feature parser
    
    * Adding map based feature parser
    
    * Updated to code to test execution from main
    
    * removed printSack
    
    * removed printSack
    
    * WIP
    
    * Refactor test cases
    
    * Rename files
    
    * Remove old converters
    
    * Species is optional
    
    * Add unconfirmed headers_with_dbxref rules
    
    * Circular mra test & logic
    
    * Add qualifier mapping
    
    * Move features into GFF3File
    
    * Make data classes record classes
    
    * Use getPrimarySourceFeature
    
    * Remove unnused imports
    
    * Taxon conversion examples
    
    * Delete questions
    
    * Apply review suggestion
    
    * Apply review suggestion
    
    * Remove roge file
    
    * Check for null source feature when parsing sourc attributes
    
    * Delete unnused tests
    
    * Remove unnecesary comments
    
    * Add spotless
    
    * Apply spotless corrections
    
    * Add license
    
    * Convert ConversionUtils to SINGLETON
    
    ---------
    
    Co-authored-by: default avatarRajkumar-D <rajkumar.devraj@gmail.com>
    1928bf26
    FFtoGFF3 Refactor
    Ruben Paz authored
    
    
    * Format & entrypoint
    
    * wip
    
    * Rules & tests
    
    * Add overlaping genes files
    
    * Add locus tag example
    
    * Adding the feature converter and updating the test to work for multiple files in a defined rule
    
    * Adding the feature converter and updating the test to work for multiple files in a defined rule
    
    * Adding map based feature parser
    
    * Adding map based feature parser
    
    * Updated to code to test execution from main
    
    * removed printSack
    
    * removed printSack
    
    * WIP
    
    * Refactor test cases
    
    * Rename files
    
    * Remove old converters
    
    * Species is optional
    
    * Add unconfirmed headers_with_dbxref rules
    
    * Circular mra test & logic
    
    * Add qualifier mapping
    
    * Move features into GFF3File
    
    * Make data classes record classes
    
    * Use getPrimarySourceFeature
    
    * Remove unnused imports
    
    * Taxon conversion examples
    
    * Delete questions
    
    * Apply review suggestion
    
    * Apply review suggestion
    
    * Remove roge file
    
    * Check for null source feature when parsing sourc attributes
    
    * Delete unnused tests
    
    * Remove unnecesary comments
    
    * Add spotless
    
    * Apply spotless corrections
    
    * Add license
    
    * Convert ConversionUtils to SINGLETON
    
    ---------
    
    Co-authored-by: default avatarRajkumar-D <rajkumar.devraj@gmail.com>
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