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Ruben Paz authored
* Format & entrypoint * wip * Rules & tests * Add overlaping genes files * Add locus tag example * Adding the feature converter and updating the test to work for multiple files in a defined rule * Adding the feature converter and updating the test to work for multiple files in a defined rule * Adding map based feature parser * Adding map based feature parser * Updated to code to test execution from main * removed printSack * removed printSack * WIP * Refactor test cases * Rename files * Remove old converters * Species is optional * Add unconfirmed headers_with_dbxref rules * Circular mra test & logic * Add qualifier mapping * Move features into GFF3File * Make data classes record classes * Use getPrimarySourceFeature * Remove unnused imports * Taxon conversion examples * Delete questions * Apply review suggestion * Apply review suggestion * Remove roge file * Check for null source feature when parsing sourc attributes * Delete unnused tests * Remove unnecesary comments * Add spotless * Apply spotless corrections * Add license * Convert ConversionUtils to SINGLETON --------- Co-authored-by:
Rajkumar-D <rajkumar.devraj@gmail.com>
Ruben Paz authored* Format & entrypoint * wip * Rules & tests * Add overlaping genes files * Add locus tag example * Adding the feature converter and updating the test to work for multiple files in a defined rule * Adding the feature converter and updating the test to work for multiple files in a defined rule * Adding map based feature parser * Adding map based feature parser * Updated to code to test execution from main * removed printSack * removed printSack * WIP * Refactor test cases * Rename files * Remove old converters * Species is optional * Add unconfirmed headers_with_dbxref rules * Circular mra test & logic * Add qualifier mapping * Move features into GFF3File * Make data classes record classes * Use getPrimarySourceFeature * Remove unnused imports * Taxon conversion examples * Delete questions * Apply review suggestion * Apply review suggestion * Remove roge file * Check for null source feature when parsing sourc attributes * Delete unnused tests * Remove unnecesary comments * Add spotless * Apply spotless corrections * Add license * Convert ConversionUtils to SINGLETON --------- Co-authored-by:
Rajkumar-D <rajkumar.devraj@gmail.com>
This project is licensed under the Apache License 2.0.
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