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This project is mirrored from https://:*****@github.com/enasequence/webin-cli.git.
Pull mirroring updated .
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v3.1.0Release v3.1.0
Release notes:
- read validation context: upgraded to htsjdk version: 2.21.3 used for BAM and CRAM validation.
- read validation context: BAM file validation fix (https://github.com/enasequence/webin-cli/issues/29).
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v3.0.0Release v3.0.0
Release notes:
- transcriptome context: ASSEMBLY_TYPE is mandatory in manifest file, allowed values are
- isolate
- metatranscriptome
- reads context: Support for N=new platform DNBSEQ(Sequencers based on DNBSEQ by MGI Tech) and their instrument models added.
- genome/sequence/transcriptome contexts: throw valid error message and reject if feature location(s) is/are invalid.
- transcriptome context: ASSEMBLY_TYPE is mandatory in manifest file, allowed values are
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v2.2.1Release V2.2.1
Release notes:
- genome context: circular topology can now be defined in flatfile. Before now, linear topology was always assumed.
- genome context: topology can now be defined in the chromosome list file by prefixing the chromosome type with 'circular-' or 'linear-', e.g. circular-chromosome. Please note that linear topology is the default.
- sequence/genome/transcriptome context: submitter provided secondary accessions will be ignored.
- genome context: one of the isolate/strain/environment_sample qualifier is now mandatory for bacteria and archaea.