Looking for some examples of basic FASTA/Q handling with Bio::DB::HTS
Created by: sestaton
First, thanks for the work on this and for making it available on CPAN. I would like to know if there are any plans to add bindings to the FASTA/Q parsing methods in kseq.h of htslib? This may be possible already or by some other method but it is not clear. For reference, @cjfields has already written bindings to kseq.h in the Bio::Kseq module, which is extremely useful because it is much faster than any pure-Perl parser. I think it would be great to have those basic sequence reading methods in one package along with all the alignment methods.