Skip to content
GitLab
Projects Groups Topics Snippets
  • /
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
  • Sign in
  • B Bio-DB-HTS
  • Project information
    • Project information
    • Activity
    • Labels
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributor statistics
    • Graph
    • Compare revisions
    • Locked files
  • Issues 6
    • Issues 6
    • List
    • Boards
    • Service Desk
    • Milestones
    • Iterations
    • Requirements
  • Jira
    • Jira
  • Merge requests 0
    • Merge requests 0
  • CI/CD
    • CI/CD
    • Pipelines
    • Jobs
    • Schedules
    • Test cases
  • Deployments
    • Deployments
    • Environments
    • Releases
  • Packages and registries
    • Packages and registries
    • Package Registry
    • Container Registry
    • Terraform modules
  • Monitor
    • Monitor
    • Incidents
  • Analytics
    • Analytics
    • Value stream
    • CI/CD
    • Code review
    • Insights
    • Issue
    • Repository
  • Wiki
    • Wiki
  • Snippets
    • Snippets
  • Activity
  • Graph
  • Create a new issue
  • Jobs
  • Commits
  • Issue Boards
Collapse sidebar
  • ensembl-gh-mirror
  • Bio-DB-HTS
  • Issues
  • #79
Closed
Open
Issue created Sep 25, 2018 by Marek Szuba@mks

lzma.h file missing on Mac OSx High Sierra v.10.13.6

Created by: SabriJamal

Hi,

I was installing Bio-DB-HTS package and run into an issue with the lzma.h header file. I apparently have the LZMA library installed but don't have the lzma.h header file. I installed the XZ library in order to get the lzma.h header file although then it got saved in...

/usr/local/Cellar/xz/5.2.4/include/lzma.h

I got around this by adding the following in bold to a line in the INSTALL.pl file

-e '/usr/include/lzma.h' || '/usr/local/Cellar/xz/5.2.4/include/lzma.h' or die <<END;

I made a post in stackoverflow regarding issues installing Bio:Perl where another user mentioned that on his Mac OSx High Sierra he had the lzma.h file located in /usr/local/include and not as required, /usr/include (see post below)

https://stackoverflow.com/questions/52468476/issues-installing-perl-module-bioperl?noredirect=1#comment91917414_52468476

I have seen quite a few post with similar issue but concerning different problems, all relating to the missing lzma.h header file.

Kind regards Sabri

Assignee
Assign to
Time tracking