Skip to content

GitLab

  • Menu
Projects Groups Snippets
    • Loading...
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
  • Sign in
  • B Bio-DB-HTS
  • Project information
    • Project information
    • Activity
    • Labels
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributors
    • Graph
    • Compare
    • Locked Files
  • Issues 6
    • Issues 6
    • List
    • Boards
    • Service Desk
    • Milestones
    • Iterations
  • Jira
    • Jira
  • Merge requests 0
    • Merge requests 0
  • Requirements
    • Requirements
  • CI/CD
    • CI/CD
    • Pipelines
    • Jobs
    • Schedules
    • Test Cases
  • Deployments
    • Deployments
    • Environments
    • Releases
  • Monitor
    • Monitor
    • Incidents
  • Packages & Registries
    • Packages & Registries
    • Package Registry
    • Container Registry
    • Infrastructure Registry
  • Analytics
    • Analytics
    • CI/CD
    • Code review
    • Insights
    • Issue
    • Repository
    • Value stream
  • Wiki
    • Wiki
  • Snippets
    • Snippets
  • Activity
  • Graph
  • Create a new issue
  • Jobs
  • Commits
  • Issue Boards
Collapse sidebar
  • ensembl-gh-mirror
  • Bio-DB-HTS
  • Issues
  • #86

Closed
Open
Created Mar 13, 2019 by Marek Szuba@mks

Install fails with "cannot remove path when cwd is /tmp/SokefcfsUv/Bio-DB-HTS"

Created by: MurphyDavid

On an ubuntu server I've been trying to install Bio-DB-HT

Running these commands

git clone https://github.com/Ensembl/Bio-DB-HT
cd Bio-DB-HTS/
sudo perl INSTALL.pl

It fails with this error. it does not prompt for password as I was already running with sudo.

Running the same command without sudo gives a prompt but the same error

switching to root with sudo su root gives the same results.

*** Installing Bio::DB::HTS using sudo. You will be asked for your password. ***

*** If this step fails because sudo isn't installed, go back and run this script again as superuser. ***
Couldn't install system-wide: 0 at INSTALL.pl line 212.
cannot remove path when cwd is /tmp/SokefcfsUv/Bio-DB-HTS for /tmp/SokefcfsUv:  at /usr/share/perl/5.22/File/Temp.pm line 778.
Assignee
Assign to
Time tracking