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Impelement write capability

Marek Szuba requested to merge github/fork/riederd/master into master

Created by: riederd

Hi Rishi,

I followed the suggestions on my last pull request (#34). Shortly:

  • remove the BAM sorting part
  • write1() now is format agnostic, meaning that it can wirte SAM (w), BAM (wb) and CRAM (wc)
  • added test cases for writing and rereading BAM and CRAM files

I hope this of help to others too and is now better suited for merging into the main branch.


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