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Allows BAM with csi index to be used

Marek Szuba requested to merge github/fork/cancerit/feature/minimalCsiSupport into master

Created by: keiranmraine

Provide csi support for use of BAMs with csi already generated as discussed in #57 (closed).

  • Errors if csi is older than BAM indicating it can't handle generation of csi currently.
  • Test added to confirm access via index works

I tested with HTSlib 1.7

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