• Jessica Severin's avatar
    finally gave in and created a Hive::DBSQL::DBAdaptor which inherits from · ba8716f1
    Jessica Severin authored
    Bio::EnsEMBL::DBSQL::DBAdaptor to match symetry with core,pipeline,compara
    This means I can remove all 'hive' adaptors from compara now and the
    URLFactory now returns by default a Hive::DBSQL::DBAdaptor.
    This also means I can make my graph configuring runnableDBs really
    adaptible to run on both Pipeline and Hive systems by doing
    if($self->db->isa('Bio::EnsEMBL::Pipeline::DBAdaptor')) {...}
    if($self->db->isa('Bio::EnsEMBL::Hive::DBAdaptor')) {...}
    ba8716f1