This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- Feb 10, 2005
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Jessica Severin authored
is asked to 're-run' a specific job. By reclaiming, this job is properly processed so when it finishes it looks like it was run normally by the system.
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- Feb 09, 2005
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Jessica Severin authored
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- Feb 08, 2005
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Jessica Severin authored
extended display in automation looping to print stats on currently running workers and an overall statistic on the progress of the whole hive (% and total jobs)
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- Feb 07, 2005
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Jessica Severin authored
-debug <level> : turn on debug messages at <level> -no_cleanup : don't perform global_cleanup when worker exits
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- Feb 04, 2005
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Jessica Severin authored
better debug system to allow worker to control analysis debug level new batch_size method will use avg_msec_per_job to calculate batch_size on the fly if analysis_stat.batch_size==0
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Jessica Severin authored
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Jessica Severin authored
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Jessica Severin authored
keep analysis_job.input_id as varchar(255) to allow UNIQUE(analysis_id,input_id) but in adaptor added logic so that if input_id in AnalysisJob object exceeds the 255 char limit to store/fetch from the analysis_data table. The input_id in the analysis_job table becomes '_ext_input_analysis_data_id ##' which is a unique internal variable to trigger the fetch routine to know to get the 'real' input_id from the analysis_data table. NO MORE 255 char limit on input_id and completely transparent to API user.
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Jessica Severin authored
if the hash keys/values are the same.
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Jessica Severin authored
to AnalysisStats object and store/fetch of avg_msec_per_job from analysis_stats table. Corresponds to schema change. Old hive databases need to do this sql to bring them up to spec; alter table analysis_stats add column avg_msec_per_job int(10) default 0 NOT NULL after batch_size; alter table analysis_stats modify column last_update datetime NOT NULL;
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- Feb 02, 2005
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Jessica Severin authored
analysis_stats.avg_msec_per_job int modified analysis_stats.last_update to a datetime so that it is only changed when the API tells it to.
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- Feb 01, 2005
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Jessica Severin authored
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- Jan 28, 2005
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Abel Ureta-Vidal authored
In run_autonomously method, updated a queen method call to print_running_worker_status. It was wrongly print_worker_status
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- Jan 19, 2005
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Jessica Severin authored
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- Jan 18, 2005
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Jessica Severin authored
to 'LOADING' to trigger sync so system knows that something changed
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Jessica Severin authored
-failed_jobs : show all failed jobs -reset_job_id <num> : reset a job back to READY so it can be rerun -reset_all_jobs_for_analysis_id <num>
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Jessica Severin authored
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Jessica Severin authored
added method reset_all_jobs_for_analysis_id to facilitate re-flowing data through new dataflow rules. extended perldoc changed the 'retry count' to 7 (so runs 1 + 7 retrys)
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Jessica Severin authored
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- Jan 13, 2005
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Jessica Severin authored
thus allowing the RunnableDBs to do tracking of output data to the specific analysis_job_id
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Jessica Severin authored
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Jessica Severin authored
Initially used to manually re-run a job with runWorker.pl -job_id
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Jessica Severin authored
and Analysis::RunnableDB superclasses
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Jessica Severin authored
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- Jan 12, 2005
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Jessica Severin authored
properly handle RunnableDBs that throw exceptions in the fetch_input stage.
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- Jan 11, 2005
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Jessica Severin authored
changed INSERT syntax to be more SQL compliant
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Jessica Severin authored
changed INSERT syntax to be more SQL compliant
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Jessica Severin authored
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Jessica Severin authored
changed INSERT syntax to be more SQL compliant
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Jessica Severin authored
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Jessica Severin authored
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- Jan 08, 2005
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Abel Ureta-Vidal authored
Set the OUTPUT_AUTOFLUSH=1 to get info immediately when in -loop mode. Also print out the time when the next loop will occur
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Abel Ureta-Vidal authored
In synchronize_AnalysisStats method, added a POSIX::ceil when setting the num_required_workers for an AnalysisStats object
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- Jan 07, 2005
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Will Spooner authored
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- Jan 06, 2005
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Jessica Severin authored
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- Dec 14, 2004
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Jessica Severin authored
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Jessica Severin authored
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- Dec 13, 2004
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Jessica Severin authored
used to always store a full URL
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- Dec 10, 2004
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Jessica Severin authored
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- Dec 09, 2004
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Jessica Severin authored
in AnalysisStatsAdaptor::fetch_by_analysis_id
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