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standaloneJob for guest-languages

Marek Szuba requested to merge bugfix/guest_standalone_job into version/2.5

Created by: muffato

Use case

I found his bug when testing #104 standaloneJob.pl org.ensembl.hive.longmult.DigitFactory -language java -a_multiplier 1234 -b_multiplier 4567 -debug 1 doesn't work unless you have manually compiled the Java code. The compilation only happens automatically when running init_pipeline.pl or runWorker.pl

Description

I'm making standaloneJob even closer to runWorker by asking the Worker itself to compile the module (after creating a Role that links the Worker to the Analysis), like in the other parts of eHive.

Possible Drawbacks

N/A

Testing

Have you added/modified unit tests to test the changes?

I will add a test soon

If so, do the tests pass/fail?

Have you run the entire test suite and no regression was detected?

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