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Code to recover a saved session

Marek Szuba requested to merge bugfix/session_recovery into feature/ensembl_friendly

Created by: s-mm

ENSCORESW-3191- Code required to recover a saved session.

I'm sneaking in changes in TranscriptAdaptor.pm and AuthorAdaptor.pm which are required for saving a modified transcript annotation. These changes still does not completely resolve the transcript saving issue.

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