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XML schema for ensembl-REST+VEP

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Closed Marek Szuba requested to merge github/fork/lindenb/xsd into master Sep 12, 2014
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Created by: lindenb

Hi Ensembl,

find below a XML/XSD schema for the XML output of REST+VEP.

As stated in the file, this document is not normative.

I tested it on a large number of grch37 variants :

$ xmllint --schema vep.xsd "http://grch37.rest.ensembl.org/vep/human/region/3:38674586-38674587:1/TAG?content-type=text/xml"

and it can be used to generate a java parser for VEP with the standard java tool XJC:

$ xjc vep.xsd

parsing a schema...
compiling a schema...
generated/AbstractConsequences.java
generated/Data.java
generated/IntergenicConsequences.java
generated/MotifFeatureConsequences.java
generated/ObjectFactory.java
generated/Opt.java
generated/RegulatoryFeatureConsequences.java
generated/TranscriptConsequence
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Source branch: github/fork/lindenb/xsd