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Cherry-picked commits from e95

Marek Szuba requested to merge github/fork/muffato/compara_from_95 into master

Created by: muffato


Those commits have already been reviewed and accepted on the release/95 branch, see #312 and #313. This PR is to copy them to master

For all the other sections of this template, see the original PRs for more details. There is

  1. a fix to handle undefined values when filtering whole-genome alignments
  2. a change to allow the real list of whole-genome alignments methods available in the database, rather than an hard-coded list


Have you added/modified unit tests to test the changes?


If so, do the tests pass/fail?


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