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Speed up transcript_variation fetch (copy of master PR)

Merged Speed up transcript_variation fetch (copy of master PR)
github/fork/willmclaren/release/83 into release/83
Merged Marek Szuba requested to merge github/fork/willmclaren/release/83 into release/83
  1. Dec 10, 2015
    • William McLaren's avatar
      Speed up transcript_variation fetch · bd587a93
      William McLaren authored 
      Use a hash instead of grepping loads, and assign the VF
properly to the TV so it doesn't go and load it again.

Also needs a fix to VariationFeatureOverlap.pm in
ensembl-variation to properly go faster.
      bd587a93