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Andreas Kusalananda Kähäri authored
Arg [1] : Bio::EnsEMBL::Slice $slice The slice from which to obtain align features. Arg [2] : String $external_db_name Name of the external DB to which the align features should be restricted. Arg [3] : (optional) string $logic_name The logic name of the type of features to obtain. Example : @feats = $adaptor->fetch_all_by_Slice_and_external_db( $slice, 'EMBL' ); Description: Returns a listref of features created from the database which are on the Slice $slice and associated with external DB $external_db_name. If logic name is defined, only features with an analysis of type $logic_name will be returned. Returntype : listref of Bio::EnsEMBL::BaseAlignFeatures in Slice coordinates Exceptions : thrown if $external_db_name is not defined or if the subclass does not return a table alias for the external_db table from _tables() Caller : general Status : At Risk Also change one occurance of the word "PepAlignFeatureAdaptor" to "ProteinAlignFeatureAdaptor".
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