replaced source ncRNA::MULTI with RFAM::MULTI and miRBase::MULTI

misc-scripts/xref_mapping/xref_config.ini

@@ -234,7 +234,8 @@ source          = RefSeq_dna::MULTI-vertebrate_other
 source          = RefSeq_peptide::MULTI-vertebrate_other
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 #source          = Uniprot/Varsplic::MULTI
 
 [source VB_Community_Annotation::aedes_aegypti]
@@ -3125,24 +3126,24 @@ data_uri        = ftp://ftp.jgi-psf.org/pub/JGI_data/Ciona/v2.0/FM1.aa.fasta.gz
 [source RFAM::MULTI]
 # Used by bos_taurus, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_pseudoobscura, erinaceus_europaeus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes,pongo_abelii, rattus_norvegicus, ictidomys_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis, ornithorhynchus_anatinus
 name            = RFAM
-download        = N
+download        = Y
 order           = 70
 priority        = 1
 prio_descr      =
-parser          = comes via ncRNA_DBParser
-release_uri     =
-data_uri        =
+parser          = RFAMParser
+release_uri     = 
+data_uri        = ftp://ftp.sanger.ac.uk/pub/databases/Rfam/CURRENT/Rfam.seed.gz
 
 [source miRBase::MULTI]
 # Used by bos_taurus, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, erinaceus_europaeus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes,pongo_abelii, rattus_norvegicus, ictidomys_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis, ornithorhynchus_anatinus
 name            = miRBase
-download        = N
+download        = Y
 order           = 70
 priority        = 1
 prio_descr      =
-parser          = comes via ncRNA_DBParser
+parser          = miRBaseParser
 release_uri     =
-data_uri        =
+data_uri        = ftp://mirbase.org/pub/mirbase/CURRENT/miRNA.dat.gz
 
 [source miRBase_gene_name]
 # Used homo_sapiens,mus_musculus
@@ -3166,17 +3167,6 @@ parser          = comes via official naming
 release_uri     =
 data_uri        =
 
-
-[source ncRNA::MULTI]
-name            = ncRNA
-download        = Y
-order           = 70
-priority        = 1
-prio_descr      =
-parser          = ncRNA_DBParser
-release_uri     =
-data_uri        = script:host=>genebuild7,port=>3306,dbname=>sw4_ncRNA_Xrefs,
-
 [source ncRNA::EG]
 name            = ncRNA
 download        = Y
@@ -3788,7 +3778,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species anopheles_gambiae]
@@ -3969,7 +3960,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species neosartorya_fischeri]
@@ -4004,7 +3996,8 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
 source          = goslim_goa::MULTI
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species puccinia_graministritici]
 taxonomy_id     = 418459
@@ -4206,7 +4199,8 @@ source          = UniGene::bos_taurus
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 source          = goslim_goa::MULTI
 
 [species caenorhabditis_elegans]
@@ -4237,7 +4231,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species canis_familiaris]
 taxonomy_id     = 9615
@@ -4253,7 +4248,8 @@ source          = UniGene::canis_familiaris
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species ciona_intestinalis]
 taxonomy_id     = 7719
@@ -4273,7 +4269,8 @@ source          = cint_aniseed_v1::ciona_intestinalis
 source          = cint_aniseed_v2::ciona_intestinalis
 source          = cint_jgi_v1::ciona_intestinalis
 source          = cint_jgi_v2::ciona_intestinalis
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species ciona_savignyi]
 taxonomy_id     = 51511
@@ -4290,7 +4287,8 @@ source          = UniGene::ciona_savignyi
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species culex_quinquefasciatus]
 taxonomy_id     = 7176
@@ -4327,7 +4325,8 @@ source          = Uniprot/SWISSPROT::DIRECT
 source          = ZFIN_ID::danio_rerio#01
 source          = ZFIN_ID::danio_rerio#02
 source          = ZFIN_ID::danio_rerio#03
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 source          = ZFIN_ID_curated_transcript::danio_rerio
 
 [species dasypus_novemcinctus]
@@ -4341,7 +4340,8 @@ source          = Interpro::MULTI
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species dictyostelium_discoideum]
 taxonomy_id     = 366501
@@ -4371,7 +4371,8 @@ source          = RefSeq_dna::MULTI-vertebrate_mammalian
 source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species drosophila_melanogaster]
 taxonomy_id     = 7227
@@ -4598,7 +4599,8 @@ source          = Interpro::MULTI
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species erinaceus_europaeus]
 taxonomy_id     = 9365
@@ -4614,7 +4616,8 @@ source          = UniGene::MULTI
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species equus_caballus]
 taxonomy_id     = 9796
@@ -4630,7 +4633,8 @@ source          = UniGene::equus_caballus
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species felis_catus]
 taxonomy_id     = 9685
@@ -4643,7 +4647,8 @@ source          = Interpro::MULTI
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species gallus_gallus]
 taxonomy_id     = 9031
@@ -4660,7 +4665,8 @@ source          = UniGene::gallus_gallus
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species gasterosteus_aculeatus]
 taxonomy_id     = 69293
@@ -4676,7 +4682,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_other
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species gorilla_gorilla]
 taxonomy_id     = 9593
@@ -4691,7 +4698,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species homo_sapiens]
@@ -4719,7 +4727,8 @@ source          = UniGene::homo_sapiens
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = miRBase::MULTI
+source		= RFAM::MULTI
 source          = UCSC::homo_sapiens
 source          = HGNC_curated_transcript::homo_sapiens
 source          = goslim_goa::MULTI
@@ -4749,7 +4758,8 @@ source          = Interpro::MULTI
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 source          = RefSeq_dna::MULTI-vertebrate_mammalian
 source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 
@@ -4767,7 +4777,8 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
 source          = UniGene::macaca_mulatta
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species meleagris_gallopavo]
@@ -4784,7 +4795,8 @@ source          = UniGene::meleagris_gallopavo
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species microcebus_murinus]
 taxonomy_id     = 30608
@@ -4801,7 +4813,8 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot::EMBL
 source          = UniProt::protein_id
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species monodelphis_domestica]
@@ -4818,7 +4831,8 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
 source          = UniGene::monodelphis_domestica
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species mus_musculus]
 taxonomy_id     = 10090
@@ -4844,7 +4858,8 @@ source          = UniGene::mus_musculus
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 source          = UCSC::mus_musculus
 source          = Fantom::mus_musculus
 
@@ -4863,7 +4878,8 @@ source          = UniGene::myotis_lucifugus
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species ochotona_princeps]
 taxonomy_id     = 9978 
@@ -4878,7 +4894,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species ornithorhynchus_anatinus]
 taxonomy_id     = 9258
@@ -4895,7 +4912,8 @@ source          = Uniprot/SWISSPROT::DIRECT
 source          = Oxford_FGU_Oa_tscript::ornithorhynchus_anatinus
 source          = Oxford_FGU_Oa_gene::ornithorhynchus_anatinus
 source          = Platypus_olfactory_receptor::ornithorhynchus_anatinus
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species oryctolagus_cuniculus]
 taxonomy_id     = 9986
@@ -4908,7 +4926,8 @@ source          = Interpro::MULTI
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species oryzias_latipes]
 taxonomy_id     = 8090
@@ -4926,7 +4945,8 @@ source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
 source          = UniProt::protein_id
 source          = Uniprot::EMBL
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species otolemur_garnettii]
@@ -4945,7 +4965,8 @@ source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
 source          = Uniprot::EMBL
 source          = UniProt::protein_id
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species pan_troglodytes]
@@ -4960,7 +4981,8 @@ source          = RefSeq_dna::pan_troglodytes
 source          = RefSeq_peptide::pan_troglodytes
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species pediculus_humanus]
 taxonomy_id     = 121225
@@ -4989,7 +5011,8 @@ source          = UniGene::MULTI
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species procavia_capensis]
 taxonomy_id     = 9813
@@ -5004,7 +5027,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species pteropus_vampyrus]
@@ -5020,7 +5044,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species rattus_norvegicus]
 taxonomy_id     = 10116
@@ -5038,7 +5063,8 @@ source          = UniGene::rattus_norvegicus
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species saccharomyces_cerevisiae]
@@ -5089,7 +5115,8 @@ source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
 source          = Uniprot::EMBL
 source          = UniProt::protein_id
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species phaeodactylum_tricornutum]
@@ -5220,7 +5247,8 @@ source          = UniGene::MULTI
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species taeniopygia_guttata]
 taxonomy_id     = 59729
@@ -5236,7 +5264,8 @@ source          = UniGene::taeniopygia_guttata
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species takifugu_rubripes]
 taxonomy_id     = 31033
@@ -5252,7 +5281,8 @@ source          = UniGene::takifugu_rubripes
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species tarsius_syrichta]
 taxonomy_id     = 9478
@@ -5267,7 +5297,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species tetraodon_nigroviridis]
 taxonomy_id     = 99883
@@ -5282,7 +5313,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_other
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 source          = Genoscope_pred_gene::tetraodon_nigroviridis
 source          = Genoscope_pred_transcript::tetraodon_nigroviridis
 source          = Genoscope_pred_translation::tetraodon_nigroviridis
@@ -5303,7 +5335,8 @@ source          = UniGene::MULTI
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species tursiops_truncatus]
 taxonomy_id     = 9739
@@ -5318,7 +5351,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species vicugna_pacos]
 taxonomy_id     = 30538
@@ -5333,7 +5367,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species choloepus_hoffmanni]
 taxonomy_id     = 9358
@@ -5348,7 +5383,8 @@ source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species xenopus_tropicalis]
 taxonomy_id     = 8364
@@ -5365,7 +5401,8 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
 source          = Xenopus_Jamboree::xenopus_tropicalis
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 [species magnaporthe_oryzae]
 taxonomy_id     = 242507
@@ -5566,7 +5603,8 @@ source          = RefSeq_dna::MULTI-vertebrate_mammalian
 source          = RefSeq_peptide::MULTI-vertebrate_mammalian
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 
 
 [species sus_scrofa]
@@ -5582,7 +5620,8 @@ source          = UniGene::sus_scrofa
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
-source          = ncRNA::MULTI
+source          = RFAM::MULTI
+source		= miRBase::MULTI
 source          = goslim_goa::MULTI
 
 
@@ -5597,7 +5636,6 @@ source          = RefSeq_dna::MULTI-Plants
 source          = RefSeq_peptide::MULTI-Plants
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
-#source          = ncRNA::MULTI
 source          = goslim_goa::EG
 
 [species glycine_max]
@@ -5611,7 +5649,6 @@ source          = RefSeq_dna::MULTI-Plants
 source          = RefSeq_peptide::MULTI-Plants
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
-#source          = ncRNA::MULTI
 source          = goslim_goa::EG
 
 [species oryza_glaberrima]
@@ -5625,7 +5662,6 @@ source          = RefSeq_dna::MULTI-Plants
 source          = RefSeq_peptide::MULTI-Plants
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
-#source          = ncRNA::MULTI
 source          = goslim_goa::EG
 
 [species brassica_rapa]