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- Jan 17, 2014
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Alessandro Vullo authored
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- Jan 15, 2014
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Andrew Yates authored
Remove read coverage support
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William McLaren authored
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Magali Ruffier authored
* dev: ensembl_ontology updated to release 75 added new methods for readthrough counts more test cases for thoses test databases in sync with latest schema removed Test::Warnings dependency not available with default installation will come back under another form looking for value 94, not 58
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Magali Ruffier authored
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Magali Ruffier authored
more test cases for thoses
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Magali Ruffier authored
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Alessandro Vullo authored
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Alessandro Vullo authored
[ENSCORESW-797]. Use git show to retrieve whatever branch version of sql/table.sql file is requested.
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Magali Ruffier authored
not available with default installation will come back under another form
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Magali Ruffier authored
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- Jan 13, 2014
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
fail. This fixes it by sorting out the auto increment identifier
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
Due to changes in BaseFeatureAdaptor we need to save the state of meta_coord otherwise a number of tests will begin to fail. Same is true of xref.
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Magali Ruffier authored
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Magali Ruffier authored
* dev: update attrib_type table, using longer varchar for 'code' column
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Magali Ruffier authored
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Alessandro Vullo authored
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Alessandro Vullo authored
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- Jan 10, 2014
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Magali Ruffier authored
if attribute already exists, not need to scream warnings
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Magali Ruffier authored
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William McLaren authored
The read_coverage table and its API support are being removed from the variation API; remove calls to these API components and remove references from code docs
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- Jan 09, 2014
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Magali Ruffier authored
* dev: no need leaving unliked entries when removing slice, remove any attached assembly entries
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Magali Ruffier authored
when removing slice, remove any attached assembly entries
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
if this is the last feature of its kind, delete corresponding meta_coord entry if it was the longest feature of its kind, update meta_coord to second longest feature
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- Jan 07, 2014
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Andy Yates authored
Thanks to Nathan and Gareth for pointing this out. Due to the Git migration we now have to use ensembl-funcgen for the regulation checkout.
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- Jan 03, 2014
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Magali Ruffier authored
* dev: added option $filename for get_FTP if filename is specified, will save source to file rather than in an array good for big downloads
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Magali Ruffier authored
if filename is specified, will save source to file rather than in an array good for big downloads
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James Allen authored
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