Commits · 31763196846f524bd56c67ad36c3a249d6b9e76e · ensembl-gh-mirror / ensembl

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Apr 05, 2005
- Added transcript_supporting_feature table · 31763196
  Stephen Searle authored 19 years ago
  
  31763196
- Allow 7 args as well as 6 in map · 59eebac6
  Stephen Searle authored 19 years ago
  
  59eebac6
- Added supporting feature lazy loading · 17c888b4
  Stephen Searle authored 19 years ago
  
  17c888b4
- New adaptor for transcript supporting features · 0dde70c8
  Stephen Searle authored 19 years ago
  
  0dde70c8
- Added supporting feature store · 39a0fdff
  Stephen Searle authored 19 years ago
  
  39a0fdff
- Added TranscriptSupportingFeatureAdaptor · 2dd5aed8
  Stephen Searle authored 19 years ago
  
  2dd5aed8
- Changed from using toplevel to chromosome coordinate systems · c744b912
  Stephen Searle authored 19 years ago
  
  c744b912
Apr 04, 2005
- Script to load regulatory feature data (e.g. micro-RNA) into core db. · 9623b6e0
  Glenn Proctor authored 19 years ago
  
  9623b6e0
- honeybee and seasquirt initial data added · e5b841b7
  Ian Longden authored 19 years ago
  
  e5b841b7
- Added searching for unlinked transcripts to deal with alternaltive UTRs in elegans. · efe1fee8
  Glenn Proctor authored 19 years ago
  
  efe1fee8
- Simplified since we're now using direct xrefs for elegans rather than mapping. · d9d39b5e
  Glenn Proctor authored 19 years ago
  
  d9d39b5e
- *** empty log message *** · ff515ef8
  Glenn Proctor authored 19 years ago
  
  ff515ef8
Apr 01, 2005
- Refactoring to allow easier overriding of gene & transcript display_xref setting in subclasses. · 92a229b9
  Glenn Proctor authored 19 years ago
```
Added "search" for UTR transcripts when generating xref links.
```
  92a229b9
- Added elegans-specific gene & transcript display_xref setting. · 3ab99939
  Glenn Proctor authored 19 years ago
  
  3ab99939
- Created; create xrefs & direct_xrefs from stable IDs for WormBase-imported... · 43687763
  Glenn Proctor authored 19 years ago
```
Created; create xrefs & direct_xrefs from stable IDs for WormBase-imported genomes (e.g. elegans). Subclass of DatabaseParser.pm
```
  43687763
- Created; base class for parsers that connect to databases. · 28a00b37
  Glenn Proctor authored 19 years ago
  
  28a00b37
- Added source for elegans that uses WormbaseDatabseStableIDParser. · 6544e72d
  Glenn Proctor authored 19 years ago
  
  6544e72d
- Added support for parsing from databases (rather than files). · 4573a115
  Glenn Proctor authored 19 years ago
  
  4573a115
- *** empty log message *** · fcf39ea9
  Glenn Proctor authored 19 years ago
  
  fcf39ea9
- better handlers archive stable ids · bac4579b
  Web Admin authored 19 years ago
  
  bac4579b
- Typo. · 7879f0e8
  Glenn Proctor authored 19 years ago
  
  7879f0e8
Mar 31, 2005
- Implemented store method for Marker objects in MarkerAdaptor, and added... · 2e126863
  Will Spooner authored 19 years ago
```
Implemented store method for Marker objects in MarkerAdaptor, and added recursive store functionality to MarkerFeatureAdaptor
```
  2e126863
- Removed wormbase info as this will now be obtained only from the wormbase file · ce5aa54a
  Ian Longden authored 19 years ago
  
  ce5aa54a
Mar 30, 2005
- allow for undef returned as mapper from AssemblyMapperAdaptor · 3eacfbc0
  Arne Stabenau authored 19 years ago
  
  3eacfbc0
- Added missing directories · df3df556
  Glenn Proctor authored 19 years ago
  
  df3df556
- added WormPepParser docs · 94077fdd
  Ian Longden authored 19 years ago
  
  94077fdd
Mar 29, 2005
- use correct source or web will not recognise it · 5c7874c1
  Ian Longden authored 19 years ago
  
  5c7874c1
- reworked to work correctly · d5b9c845
  Ian Longden authored 19 years ago
  
  d5b9c845
- add labels for wormpep · 95f6428a
  Ian Longden authored 19 years ago
  
  95f6428a
- add dependent xref if worm transcript not found and swissprot is given · 6c49467b
  Ian Longden authored 19 years ago
  
  6c49467b
- Cannot parse files with 17 million bases, so removed these huge files · 341f3fe6
  Ian Longden authored 19 years ago
  
  341f3fe6
- tidy up · 9d6ca20c
  Ian Longden authored 19 years ago
  
  9d6ca20c
- case sensetivity issue fixed · 55d4ecc3
  Ian Longden authored 19 years ago
  
  55d4ecc3
Mar 24, 2005
- wormBase stuff added · f27e3298
  Ian Longden authored 20 years ago
  
  f27e3298
- Work still needed on WormPepParser to add if not found and has a swissprot acc. · 112ed948
  Ian Longden authored 20 years ago
  
  112ed948
- wormpep file added. Aswell as other RefSeq entries split into seperate loads · 44dfa0cc
  Ian Longden authored 20 years ago
  
  44dfa0cc
- *** empty log message *** · c06c2c8f
  Glenn Proctor authored 20 years ago
  
  c06c2c8f
- Added fetch_all_by* methods. · 137d91cc
  Glenn Proctor authored 20 years ago
  
  137d91cc
- Added fetch_all_regulatory_features() · 77990c6d
  Glenn Proctor authored 20 years ago
  
  77990c6d
- Added test for fetch_all_regulatory_features() · b589d3d2
  Glenn Proctor authored 20 years ago
  
  b589d3d2