Commits · 57a6da99460d1585e65459d1c5c980c134ee7905 · ensembl-gh-mirror / ensembl

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Jan 23, 2014
- merging in new code for LANG types · 57a6da99
  Andy Yates authored 11 years ago
  
  57a6da99
- missed one · a1bd99e5
  Andy Yates authored 11 years ago
  
  a1bd99e5
- modifying the control codes to avoid non-ascii characters being used · a7d84a2c
  Andy Yates authored 11 years ago
  
  a7d84a2c
- adding the c lang and ctype env variables. otherwise sed can fail · ad42b940
  Andy Yates authored 11 years ago
  
  ad42b940
- Email blatter was ignoring the wrong file · 4fd76f53
  Andy Yates authored 11 years ago
  
  4fd76f53
- Updating for our new possible darwin changes · 6fb18d40
  Andy Yates authored 11 years ago
  
  6fb18d40
- Hopefully the command will work now. Had to revert back to using · 5e24656f
  Andy Yates authored 11 years ago
```
an empty additional suffix for backup as otherwise the $file
command was being mistaken for part of the sed replace
```
  5e24656f
- Adding a skip to make sure we do not replace the email in the file we are replacing · 6563ef71
  Andy Yates authored 11 years ago
  
  6563ef71
- Fixing some other errors in these scripts · 14930ab2
  Andy Yates authored 11 years ago
  
  14930ab2
- Fixing after comments from Simon about sed · 89a8d5e5
  Andy Yates authored 11 years ago
  
  89a8d5e5
- Cured a self-referential foreign key, and made the syntax more exact · 770b1872
  Kieron Taylor authored 11 years ago
  
  770b1872
- Introducing the all mighty email blatter. Leaves only URLs behind · 68f3b2d7
  Andy Yates authored 11 years ago
  
  68f3b2d7
Jan 22, 2014
- Updated for our Apache 2.0 license · 164c2833
  Andy Yates authored 11 years ago
  
  164c2833
- New test for valid foreign keys in InnoDB applications. foreign_keys.sql... · 87371e92
  Kieron Taylor authored 11 years ago
```
New test for valid foreign keys in InnoDB applications. foreign_keys.sql cleaned. Tabs assassinated.
```
  87371e92
Jan 21, 2014
- uc(‘c’) to help with sql-lite support. Case mistake was ignored by MySQL. · 950e4973
  Kieron Taylor authored 11 years ago
  
  950e4973
- [ENSCORESW-799 ] This script is out of date, and has been marked as such. · 7f3796f0
  Kieron Taylor authored 11 years ago
  
  7f3796f0
Jan 20, 2014
- Human ccds database updated to release 75 · fdb991aa
  Alessandro Vullo authored 11 years ago
```
HGNC data URI updated
MIM/MIM2GENE data URI ftp server changed
```
  fdb991aa
Jan 17, 2014
- Revert "removed Test::Warnings dependency" · 94f46579
  Andy Yates authored 11 years ago
```
This reverts commit 856a5aa2.
```
  94f46579
- Missing or incomplete documentation for some methods · a0d9d3c2
  Alessandro Vullo authored 11 years ago
  
  a0d9d3c2
- Added return types to the documentation of some methods · 09b94d1e
  Alessandro Vullo authored 11 years ago
  
  09b94d1e
Jan 15, 2014
- Merge pull request #1 from willmclaren/master · 8d3d889e
  Andrew Yates authored 11 years ago
```
Remove read coverage support
```
  8d3d889e
- Merge remote-tracking branch 'local/feature/remove-rc' · 7c343422
  William McLaren authored 11 years ago
  
  7c343422
- Automatic merging of dev into master · 743c5e50
  Magali Ruffier authored 11 years ago
```
* dev:
  ensembl_ontology updated to release 75
  added new methods for readthrough counts more test cases for thoses
  test databases in sync with latest schema
  removed Test::Warnings dependency not available with default installation will come back under another form
  looking for value 94, not 58
```
  743c5e50
- ensembl_ontology updated to release 75 · 7a5652aa
  Magali Ruffier authored 11 years ago
  
  7a5652aa
- added new methods for readthrough counts · a1077250
  Magali Ruffier authored 11 years ago
```
more test cases for thoses
```
  a1077250
- test databases in sync with latest schema · 997e6855
  Magali Ruffier authored 11 years ago
  
  997e6855
- Trying to avoid trailing whitespace errors · ce6d7aab
  Alessandro Vullo authored 11 years ago
  
  ce6d7aab
- [ENSCORESW-797]. Use git show to retrieve whatever branch version of... · 6d5f38c7
  Alessandro Vullo authored 11 years ago
```
[ENSCORESW-797]. Use git show to retrieve whatever branch version of sql/table.sql file is requested.
```
  6d5f38c7
- removed Test::Warnings dependency · 856a5aa2
  Magali Ruffier authored 11 years ago
```
not available with default installation
will come back under another form
```
  856a5aa2
- looking for value 94, not 58 · f4eefe98
  Magali Ruffier authored 11 years ago
  
  f4eefe98
Jan 13, 2014
- Switching on warning checks and making sure ontology db is updated · 18e0d776
  Andy Yates authored 11 years ago
  
  18e0d776
- Make sure we use the right URL for these images · b15c94ce
  Andy Yates authored 11 years ago
  
  b15c94ce
- Enabling tests to make sure we never allow a warning test to succeed · c81b9fd3
  Andy Yates authored 11 years ago
  
  c81b9fd3
- [ENSCORESW-812 ]. Enabling travis ci · 7e106ac6
  Andy Yates authored 11 years ago
  
  7e106ac6
- A number of databases were missing · 7217065b
  Andy Yates authored 11 years ago
  
  7217065b
- Sort the patches or else they will not be applied in the right order · c35d8b0e
  Andy Yates authored 11 years ago
  
  c35d8b0e
- Output has changed but the test case did not. Fixing it · cb831258
  Andy Yates authored 11 years ago
  
  cb831258
- Better support for dbEntries test. Some harnesses caused the test to · bc54e653
  Andy Yates authored 11 years ago
```
fail. This fixes it by sorting out the auto increment identifier
```
  bc54e653
- A single = is not a comparator operator. We need to use == · b8916fa2
  Andy Yates authored 11 years ago
  
  b8916fa2
- We need to call coord_system. No method exists called cs() · 0ba63f10
  Andy Yates authored 11 years ago
  
  0ba63f10