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Added an option in BaseAdaptor to define the column of the dbID

Created by: muffato

It defaults to ${table_name}_id but allows individual adaptors to rename it. This feature would be useful for the Compara API.

I haven't changed DnaAlignFeatureAdaptor and ProteinAlignFeatureAdaptor because they're not base classes. Similarly there are still other places (especially direct SQL queries) where ${table}_id is used (ex: )

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