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SQLite support / database portability for EnsEMBL

Marek Szuba requested to merge github/fork/mjg17/experimental/db-portability/master into master

Created by: mjg17

This is my portability work to date. See docs/README.db_portability, and in particular the disclaimer therein :-)

I have verified as far as I can that the test suite still passes under MySQL.

Under SQLite:

  • cliHelper.t is skipped - not supported yet
  • dbEntries.t fails one test, I suspect this is down to the test rather than the code (autoincrement differences) but further checking required.
  • schema.t and schemaPatches.t fail.

All the best Michael

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