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Experimental/mapper update

Marek Szuba requested to merge experimental/mapper_update into master

Created by: avullo

This is to include work done on improving search for overlapping intervals using Interval Trees (ENSCORESW-2337) and updating the Slice project/project_to_slice methods, and correspondingly the higher level mappers, to correctly return the coordinates of the projected bits of the source slice (ENSCORESW-2289).

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