Cleanup strain slice (!236) · Merge requests · ensembl-gh-mirror / ensembl

Marek Szuba requested to merge github/fork/at7/cleanup_strain_slice into master Mar 29, 2018

Created by: at7

First part of removing deprecated variation code. Remove StrainSlice related code where possible.

Description

Remove deprecated code StrainSlice and StrainSliceAdaptor. Update StrainSlice occurrences in core API to use Variation::StrainSlice Add tests for remaining use of StrainSlice.

Follow up from this PR: Deprecate AlignStrainSlice and IndividualSlice Possibly move MappedSliceContainer and MappedSlice to Variation API?

Cleanup strain slice

Description

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