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  • ensembl-gh-mirror
  • ensembl
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  • !394

The ontology schema patches have been moved from ensembl/misc_scripts…

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Merged Thomas Maurel requested to merge ontology_sql_fix into master Jun 17, 2019
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…/ontology/sql to ols-ensembl-loader/sql

Requirements

  • Filling out the template is required. Any pull request that does not include enough information to be reviewed in a timely manner may be closed at the maintainers' discretion;
  • Review the contributing guidelines for this repository; remember in particular:
    • do not modify code without testing for regression
    • provide simple unit tests to test the changes
    • if you change the schema you must patch the test databases as well, see Updating the schema
    • the PR must not fail unit testing

Description

The ontology schema patches have been moved from ensembl/misc_scripts/ontology/sql to ols-ensembl-loader/sql

Use case

The script is broken at the moment: "No SQL directory found for Git repo ensembl, ontology schema type"

Benefits

The script will work again and will look at the right place for ontology sqls

Possible Drawbacks

None

Testing

Have you added/modified unit tests to test the changes? no

If so, do the tests pass/fail?

Have you run the entire test suite and no regression was detected?

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Source branch: ontology_sql_fix