Skip to content

The ontology schema patches have been moved from ensembl/misc_scripts…

Thomas Maurel requested to merge ontology_sql_fix into master

…/ontology/sql to ols-ensembl-loader/sql


  • Filling out the template is required. Any pull request that does not include enough information to be reviewed in a timely manner may be closed at the maintainers' discretion;
  • Review the contributing guidelines for this repository; remember in particular:
    • do not modify code without testing for regression
    • provide simple unit tests to test the changes
    • if you change the schema you must patch the test databases as well, see Updating the schema
    • the PR must not fail unit testing


The ontology schema patches have been moved from ensembl/misc_scripts/ontology/sql to ols-ensembl-loader/sql

Use case

The script is broken at the moment: "No SQL directory found for Git repo ensembl, ontology schema type"


The script will work again and will look at the right place for ontology sqls

Possible Drawbacks



Have you added/modified unit tests to test the changes? no

If so, do the tests pass/fail?

Have you run the entire test suite and no regression was detected?

Merge request reports