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updates to include_original_region support in map_insert and add tests

Marek Szuba requested to merge bugfix/mapInsertFix101 into release/101

Created by: ens-bwalts

Requirements

  • Filling out the template is required. Any pull request that does not include enough information to be reviewed in a timely manner may be closed at the maintainers' discretion;
  • Review the contributing guidelines for this repository; remember in particular:
    • do not modify code without testing for regression
    • provide simple unit tests to test the changes
    • if you change the schema you must patch the test databases as well, see Updating the schema
    • the PR must not fail unit testing

Description

Same changes as #482, based to release/101

Testing

Have you added/modified unit tests to test the changes?

Yes If so, do the tests pass/fail? Pass. Also passes test Parser.t in ensembl-vep

Have you run the entire test suite and no regression was detected? Passes for master

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