Fix travis build
Created by: mira13
Description
Fixing tests and travis build script. Befor in travia as a result was used variable that is always 0. So we had successful tests whatever is failed. After travis was fixed, it became obvious that some tests are not pasing, they are fixed as well - transcript, translation and gene tests. Few variables in sql requests were quoted, it doesn't make any difference in current sql, but makes code work in new sql server
detail of the fix:
before, we took as a result last command output - $? , Last tests command is perl test run inside if statement, so when after if we took $? - it was result of if, but not the test run inside. Eventually of if obviously is always 0.
Use case
Travis test result was sucsessful, even if tests fails
Benefits
We have correct test system.
Possible Drawbacks
Still few more fails of tests are not covered in this branch, so it will be futher work
Testing
Yes, all tests now correct and pass I have run all them localy and on server