Merge requests · ensembl-gh-mirror

Fixing the test suite and bits of io

ensembl-io!33 · created Mar 23, 2016 by Marek Szuba master
- Closed
- 10
updated Apr 19, 2017
exclude samples with uncalled genotypes

ensembl-io!37 · created May 05, 2016 by Marek Szuba master
- Merged
updated May 05, 2016
Update fetch_file in URL.pm

ensembl-io!42 · created May 25, 2016 by Marek Szuba master
- Merged
updated May 25, 2016
call DESTROY to close tabix file

ensembl-io!43 · created May 31, 2016 by Marek Szuba master
- Merged
- 2
updated May 31, 2016
Munge for Chr in HTSAdaptor as was for BAM Adaptor

ensembl-io!40 · created May 09, 2016 by Marek Szuba master
- Merged
updated May 09, 2016
Existing TABIX functionality via Bio::DB::HTS

ensembl-io!32 · created Mar 14, 2016 by Marek Szuba master
- Merged
- 7
updated Mar 15, 2016
Alter genotype field return type

ensembl-io!29 · created Feb 23, 2016 by Marek Szuba master
- Merged
updated Feb 24, 2016
Alter genotype field return type

ensembl-io!30 · created Feb 23, 2016 by Marek Szuba release/83
- Merged
updated Feb 23, 2016
Existing patches to make bigfile fail softly.

ensembl-io!23 · created Dec 03, 2015 by Marek Szuba master
- Merged
updated Dec 03, 2015
Attempting to fix the currently breaking test suite. 0 of 6 checklist items completed

ensembl-io!27 · created Feb 04, 2016 by Marek Szuba master
- Closed
- 5
updated Mar 24, 2016
add is_polymorphic method to aid LD genotype retrieval

ensembl-io!26 · created Jan 15, 2016 by Marek Szuba master
- Merged
updated Jan 15, 2016
code now also checks for Chr

ensembl-io!22 · created Nov 11, 2015 by Marek Szuba master
- Merged
updated May 06, 2016
Feature/htslib adds HTSAdaptor.pm

ensembl-io!25 · created Jan 04, 2016 by Marek Szuba release/83
- Merged
updated Jan 04, 2016
Meaningful help on HTTP::Tiny errors.

ensembl-io!28 · created Feb 12, 2016 by Marek Szuba master
- Merged
updated Feb 18, 2016
- Fixed bug in Fasta parser, where if the sequence wasn't accessed wh…

ensembl-io!21 · created Nov 11, 2015 by Marek Szuba master
- Merged
- 9
updated Dec 17, 2018
Support parsing from an already open file handle.

ensembl-io!17 · created Aug 18, 2015 by Marek Szuba master
enhancement
- Merged
- 5
updated Aug 20, 2015
Keeping core API dependencies to a minimum

ensembl-io!16 · created Aug 18, 2015 by Marek Szuba master
enhancement
- Merged
- 1
updated Aug 20, 2015
Minor build improvements and warning fixes

Bio-DB-HTS!69 · created Mar 20, 2018 by Marek Szuba master
- Merged
- 5
updated Apr 06, 2018
Adding travis-ci tests

ensembl-io!15 · created Aug 18, 2015 by Marek Szuba master
enhancement
- Merged
- 1
updated Aug 20, 2015
License was not correct. This is an Apache2 project.

ensembl-io!14 · created Aug 17, 2015 by Marek Szuba master
enhancement
- Merged
- 1
updated Aug 20, 2015