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emg-viral-pipeline
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This project is mirrored from
https://*****:*****@github.com/EBI-Metagenomics/emg-viral-pipeline
. Pull mirroring updated
Apr 30, 2024
.
docker
ed84ad9e
·
add some missing Dockerfile #10
·
May 13, 2020
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ete3
56235a03
·
update dag
·
Jul 14, 2020
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no_pprmeta
1541458f
·
fix parse step w/o pprmeta
·
Oct 12, 2020
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no_bitscore_filter
ba220822
·
sankey working again
·
Oct 27, 2020
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pprmeta_score
58a5875b
·
adjust pprmeta scoring
·
Oct 30, 2020
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feature/cwl-mgnify-proteindb-integration
82c96e1c
·
Revert fasta_rename changes
·
Nov 02, 2021
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bugfix/contig-tax-assign-unkown-taxa
01716651
·
Contig tax assignation. Handle cases when there is no mapping on NCBI tax.
·
Nov 25, 2022
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feature/post-processing-gff
b4205784
·
Revert changes that aren't needed.
·
Nov 25, 2022
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bugfix/install-nf-metris-trace-deps-on-containers
47df302d
·
Update containers, nf trace compatible now. Some to biocontainers.
·
Nov 26, 2022
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feature/ci-pytest
6f72c8e6
·
Add one simple pytest-workflow test
·
Jan 05, 2023
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hotfix/issue-93-virsorter-prophage-endof-contig-report-issue
738fb71f
·
Re-build the virsorter container, using one hosted in quay by our team.
·
Mar 01, 2023
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bugfix/issue-92-prophages-and-gff-generation
8fd977a9
·
Swap PyYAML for Ruamel.yaml on test_cwl_input_generator.py
·
Mar 20, 2023
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bugfix/fix_script_write_viral_gff
65ca935d
·
Push fixed gff file for unit test
·
Apr 27, 2023
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voting3
d13ec129
·
Upgrade the r_chromomap container (and pushed to quay).
·
Jun 28, 2023
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bugfix/remove-old-viphogs-models
88b26f92
·
Updated metadata file and warning message.
·
Jul 05, 2023
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bugfix/chromomap-container
cf179e7e
·
Fix the Chromomap container.
·
Sep 06, 2023
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out_lineage
80593cce
·
include more output ranks and reverse order
·
Sep 19, 2023
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master
default
protected
3708071d
·
Merge pull request #114 from EBI-Metagenomics/dev
·
Sep 21, 2023
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